Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1068
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.7  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 114 NEFYNLIKYNVTYRNITYVMLNRILPRTCSLLNSASYNFRHY 239
           NEF  L+K+ +  R   + M+N+ +     +L    Y+ + +
Sbjct: 78  NEFMQLLKHGMLPRGQVFTMMNKEMRHQAVVLFRLLYSAKTF 119


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 114 NEFYNLIKYNVTYRNITYVMLNRILPRTCSLLNSASYNFRHY 239
           NEF  L+K+ +  R   + M+N+ +     +L    Y+ + +
Sbjct: 78  NEFMQLLKHGMLPRGQVFTMMNKEMRHQAVVLFRLLYSAKTF 119


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 505 AVSEFRPQGTQGLIKTGLVMIIT 437
           ++S  +  GT+G+ K+G V++ T
Sbjct: 186 SISYVKDDGTEGIAKSGDVLVET 208


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 246 TNSNDENYMMQN 211
           TN+ND++Y  QN
Sbjct: 368 TNTNDQDYSSQN 379


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -3

Query: 437  ASFHGQKHFLHQQLYHSHS 381
            A  H     LH  +YH H+
Sbjct: 1728 AGLHPNNTLLHSFMYHEHA 1746


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -3

Query: 437  ASFHGQKHFLHQQLYHSHS 381
            A  H     LH  +YH H+
Sbjct: 1724 AGLHPNNTLLHSFMYHEHA 1742


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,525
Number of Sequences: 438
Number of extensions: 3377
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)