Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1067
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    86   4e-18
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   3.0  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    26   4.0  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    26   4.0  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   5.3  

>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 86.2 bits (204), Expect = 4e-18
 Identities = 38/74 (51%), Positives = 51/74 (68%)
 Frame = +2

Query: 260 MKIGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKR 439
           +KI TH G FH DE LA +ML+ L ++  A+I+R+RD   L+ CDI+VDVG  +D   K 
Sbjct: 5   VKIATHSGTFHADEALAVYMLRRLDRFSGAQIVRSRDPQVLDSCDIIVDVGGKYD-GIKY 63

Query: 440 YDHHQAGFNETLSP 481
           +DHHQ  FN+T SP
Sbjct: 64  FDHHQREFNDTFSP 77



 Score = 31.5 bits (68), Expect = 0.11
 Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +3

Query: 513 KLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLK-*FTRSYESFI 641
           +LSSAGL+Y ++G ++I  +  +   +  +DL+  + + Y+SF+
Sbjct: 82  RLSSAGLIYKHFGREVIHAVLPQ-LKINEQDLETLYEKVYQSFV 124


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 429  SWSKTLPTSTTISQSFSLFRSLV 361
            SW+ T P+      SF LFRSL+
Sbjct: 1578 SWATTCPSRRLACNSFQLFRSLL 1600


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = -2

Query: 452 GDDHNASFHGQKHFLHQQLYHSHSAYLDLLCG*SQHLCIEEDSLA*SKLELHRSGILRRE 273
           G    A+ + QK+   QQL   + +  +LL   ++ LC++ D L  S  E   S IL  +
Sbjct: 664 GTLEEATSYYQKNTELQQLLKQNESASELLKSRNEKLCVDYDKLR-SVFEEDSSKILSLQ 722

Query: 272 SQSSSLNT 249
            ++ +L +
Sbjct: 723 KENENLQS 730


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +2

Query: 323 KNLPQYKDAEIIRTRDLNKLNDC-DIVVDVGSVF---DHEKKRYDHHQAGFNE 469
           KNL    D  +I TR +N   +   IV DV  +    DH++  YD H++ F +
Sbjct: 115 KNLASEMD--VINTRIVNPTGELLKIVKDVDKLLLKRDHKQLDYDRHRSSFKK 165


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = -2

Query: 488 GLKDSRSH*NRLGDDHNASFHGQKHFLHQQLYHSHS 381
           G  DS  H     D HN   HG  H  H    +S S
Sbjct: 10  GSDDSTHHHTHDYDHHNHDHHGHDHHSHDSSSNSSS 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,770
Number of Sequences: 5004
Number of extensions: 48278
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)