BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1067 (642 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ... 86 4e-18 SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 27 3.0 SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 4.0 SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 4.0 SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 26 5.3 >SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 324 Score = 86.2 bits (204), Expect = 4e-18 Identities = 38/74 (51%), Positives = 51/74 (68%) Frame = +2 Query: 260 MKIGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKR 439 +KI TH G FH DE LA +ML+ L ++ A+I+R+RD L+ CDI+VDVG +D K Sbjct: 5 VKIATHSGTFHADEALAVYMLRRLDRFSGAQIVRSRDPQVLDSCDIIVDVGGKYD-GIKY 63 Query: 440 YDHHQAGFNETLSP 481 +DHHQ FN+T SP Sbjct: 64 FDHHQREFNDTFSP 77 Score = 31.5 bits (68), Expect = 0.11 Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Frame = +3 Query: 513 KLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLK-*FTRSYESFI 641 +LSSAGL+Y ++G ++I + + + +DL+ + + Y+SF+ Sbjct: 82 RLSSAGLIYKHFGREVIHAVLPQ-LKINEQDLETLYEKVYQSFV 124 >SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosaccharomyces pombe|chr 2|||Manual Length = 2196 Score = 26.6 bits (56), Expect = 3.0 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -1 Query: 429 SWSKTLPTSTTISQSFSLFRSLV 361 SW+ T P+ SF LFRSL+ Sbjct: 1578 SWATTCPSRRLACNSFQLFRSLL 1600 >SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1125 Score = 26.2 bits (55), Expect = 4.0 Identities = 19/68 (27%), Positives = 34/68 (50%) Frame = -2 Query: 452 GDDHNASFHGQKHFLHQQLYHSHSAYLDLLCG*SQHLCIEEDSLA*SKLELHRSGILRRE 273 G A+ + QK+ QQL + + +LL ++ LC++ D L S E S IL + Sbjct: 664 GTLEEATSYYQKNTELQQLLKQNESASELLKSRNEKLCVDYDKLR-SVFEEDSSKILSLQ 722 Query: 272 SQSSSLNT 249 ++ +L + Sbjct: 723 KENENLQS 730 >SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces pombe|chr 2|||Manual Length = 466 Score = 26.2 bits (55), Expect = 4.0 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Frame = +2 Query: 323 KNLPQYKDAEIIRTRDLNKLNDC-DIVVDVGSVF---DHEKKRYDHHQAGFNE 469 KNL D +I TR +N + IV DV + DH++ YD H++ F + Sbjct: 115 KNLASEMD--VINTRIVNPTGELLKIVKDVDKLLLKRDHKQLDYDRHRSSFKK 165 >SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces pombe|chr 3|||Manual Length = 286 Score = 25.8 bits (54), Expect = 5.3 Identities = 13/36 (36%), Positives = 14/36 (38%) Frame = -2 Query: 488 GLKDSRSH*NRLGDDHNASFHGQKHFLHQQLYHSHS 381 G DS H D HN HG H H +S S Sbjct: 10 GSDDSTHHHTHDYDHHNHDHHGHDHHSHDSSSNSSS 45 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,449,770 Number of Sequences: 5004 Number of extensions: 48278 Number of successful extensions: 117 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 116 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 287744314 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -