Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1067
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0345 - 28142434-28142658,28143087-28143158,28143252-281433...    91   7e-19
02_02_0707 + 13144147-13144788,13145115-13148663                       29   2.4  
10_08_0444 + 17971724-17971797,17972119-17972176,17972613-179727...    29   4.1  
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850...    28   7.2  

>02_05_0345 -
           28142434-28142658,28143087-28143158,28143252-28143371,
           28143483-28143674,28144919-28145017,28145448-28145594,
           28146310-28146513
          Length = 352

 Score = 91.1 bits (216), Expect = 7e-19
 Identities = 37/79 (46%), Positives = 54/79 (68%)
 Frame = +2

Query: 263 KIGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRY 442
           ++GTH+G FHCDE L C++++   Q+  A+++RTRD   L+  D V+DVG V+D  + RY
Sbjct: 31  RVGTHNGSFHCDEALGCYLIRLTSQFAGADVVRTRDPQILDTLDAVLDVGGVYDPSRHRY 90

Query: 443 DHHQAGFNETLSP*GLNSE 499
           DHHQ GFNE     G N++
Sbjct: 91  DHHQKGFNEVFGH-GFNTK 108



 Score = 34.7 bits (76), Expect = 0.063
 Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
 Frame = +3

Query: 513 KLSSAGLVYAYYGEDIIQQLKEESTSLTNEDL-K*FTRSYESFI 641
           KLSSAGLVY ++G++II   KE   S  +ED+ + +   Y+SF+
Sbjct: 108 KLSSAGLVYKHFGKEII--AKELEVSEDHEDVHRLYLAIYKSFV 149


>02_02_0707 + 13144147-13144788,13145115-13148663
          Length = 1396

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +3

Query: 105  TLNNEFYNLIKYNVTYRNITYVMLNRILPRTCSLLNSASYNFRHYC 242
            TLNN    ++ +   + +IT+++ + ++P  C+L+  A +   H C
Sbjct: 992  TLNNRDRIVLLWQGVFEHITHIVQSTVMP--CNLVEKAVFGLLHIC 1035


>10_08_0444 +
           17971724-17971797,17972119-17972176,17972613-17972708,
           17972974-17973000,17973019-17973075,17973604-17973687,
           17974304-17974384,17974928-17975071,17975218-17975309,
           17975998-17976079,17976818-17977000,17977360-17977438,
           17977555-17977613,17978162-17978290,17979188-17979367,
           17980312-17980446,17980528-17980602,17980890-17980947,
           17981035-17981282,17981594-17981733,17981961-17982132,
           17982797-17982887,17983099-17983221,17984951-17985032,
           17985715-17985835,17985886-17985915,17986427-17986549
          Length = 940

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 284 VFHCDEVLACF-MLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYDHHQAG 460
           + H + V +C  +L  +   K A +    D N+L++C  ++  GS  +     Y  HQ  
Sbjct: 597 LMHNEVVTSCSNLLAGMEILKAAMVQLLNDYNRLSECVKIIPGGSTLNRNLPYYGVHQVH 656

Query: 461 F 463
           F
Sbjct: 657 F 657


>07_03_1591 +
           27967065-27967090,27967236-27968054,27984940-27985022,
           27985590-27985744,27985956-27986461,27986551-27986703,
           27987146-27987485,27987558-27987822,27987897-27988634,
           27989734-27989779,27989849-27990223,27991511-27991567,
           27991640-27992438
          Length = 1453

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 23/62 (37%), Positives = 34/62 (54%)
 Frame = +2

Query: 269 GTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYDH 448
           G+H+GV     V AC M  N P+ KD      R  +KL + ++V  VG VFD  ++ YD 
Sbjct: 334 GSHEGVDRPPCVQACEM--NTPE-KDRVY---RHDSKLRE-EMVPKVGMVFDSYEEAYDF 386

Query: 449 HQ 454
           ++
Sbjct: 387 YE 388


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,164,370
Number of Sequences: 37544
Number of extensions: 255105
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)