BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1067 (642 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.) 106 2e-23 SB_33178| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60 SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10) 29 3.2 SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053) 28 7.4 SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 9.8 SB_22026| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8 >SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 951 Score = 106 bits (254), Expect = 2e-23 Identities = 45/67 (67%), Positives = 51/67 (76%) Frame = +2 Query: 263 KIGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRY 442 KIGTH+G FHCDEVLAC+MLK LP+Y A+IIRTRD L CD+VVDV V+D K RY Sbjct: 12 KIGTHNGTFHCDEVLACYMLKQLPEYSHADIIRTRDPKILEQCDVVVDVSGVYDASKHRY 71 Query: 443 DHHQAGF 463 DHHQ F Sbjct: 72 DHHQRSF 78 Score = 29.9 bits (64), Expect = 1.8 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = +3 Query: 513 KLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLK*FTRSYESFI 641 KLSSAGLVY ++G ++ Q+ + D K + + YE+ I Sbjct: 95 KLSSAGLVYLHFGRRVLSQVMQMPEDHQALD-KVYDKIYENLI 136 >SB_33178| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 120 Score = 31.5 bits (68), Expect = 0.60 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -2 Query: 476 SRSH*NRLGDDHNASFHGQKHFLHQQLYHSHSAY 375 SR H + +D ++FHGQK H+ L HS +A+ Sbjct: 76 SRQHMGAIDEDSTSAFHGQK---HETLVHSKAAF 106 >SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10) Length = 296 Score = 29.1 bits (62), Expect = 3.2 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +3 Query: 54 IPN*IYHNR*HSTVCVETLNNEF-YNLIKYNVTYRNITYVMLNRILPRTCSLLNSASYNF 230 +PN HN HST +LNN +N + + ++T + LP T + NS + Sbjct: 198 LPNTTRHNSLHSTTRHNSLNNTTRHNSLTNTTRHNSLTNTTRHNSLPNT-ARHNSLTNTT 256 Query: 231 RHYCLSS 251 RH L++ Sbjct: 257 RHNSLTN 263 >SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053) Length = 636 Score = 27.9 bits (59), Expect = 7.4 Identities = 11/29 (37%), Positives = 20/29 (68%) Frame = -3 Query: 469 LIKTGLVMIITLLFMVKNTSYINNYITVI 383 +I T ++MIIT+ + + + INN+I +I Sbjct: 92 IIITIIIMIITITITINHITIINNHINII 120 >SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0) Length = 927 Score = 27.5 bits (58), Expect = 9.8 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = +2 Query: 287 FHCDEVLACFMLKNLPQYKDAEIIRTR 367 + CDE CF KN P+ + +RT+ Sbjct: 271 YRCDECCECFTQKNTPEDTPNDSLRTK 297 >SB_22026| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 72 Score = 27.5 bits (58), Expect = 9.8 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = +3 Query: 150 YRNITYVMLNRILPRTCSLLNSASYNFRHY 239 Y N T+ + ++ +C +L S S+NF Y Sbjct: 39 YENTTFTFADTLVRSSCEVLISLSFNFSFY 68 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,197,865 Number of Sequences: 59808 Number of extensions: 321913 Number of successful extensions: 688 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 633 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 686 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1620947750 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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