Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1067
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83113-8|CAB05549.1|  340|Caenorhabditis elegans Hypothetical pr...   116   1e-26
Z81042-6|CAB02797.1|  340|Caenorhabditis elegans Hypothetical pr...   116   1e-26
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    33   0.23 
Z78062-1|CAB01495.1|  447|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF022967-12|AAB69873.2|  467|Caenorhabditis elegans Hypothetical...    28   4.9  

>Z83113-8|CAB05549.1|  340|Caenorhabditis elegans Hypothetical
           protein C27H6.8 protein.
          Length = 340

 Score =  116 bits (280), Expect = 1e-26
 Identities = 47/70 (67%), Positives = 55/70 (78%)
 Frame = +2

Query: 266 IGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYD 445
           IGTH G FHCDE  ACFMLK LPQ+KD  I+RTRD  +L  CDI+VDVG +FDH K+RYD
Sbjct: 5   IGTHSGKFHCDEAFACFMLKQLPQFKDHSILRTRDAAQLEKCDIIVDVGGIFDHSKQRYD 64

Query: 446 HHQAGFNETL 475
           HHQ GF +T+
Sbjct: 65  HHQRGFTDTM 74



 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 21/43 (48%), Positives = 29/43 (67%)
 Frame = +3

Query: 513 KLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLK*FTRSYESFI 641
           KLSSAGLVYA+YG ++I Q+   + S +  DL  + R YE F+
Sbjct: 85  KLSSAGLVYAHYGREVINQILGGNVSSSMIDLF-YHRLYEQFV 126


>Z81042-6|CAB02797.1|  340|Caenorhabditis elegans Hypothetical
           protein C27H6.8 protein.
          Length = 340

 Score =  116 bits (280), Expect = 1e-26
 Identities = 47/70 (67%), Positives = 55/70 (78%)
 Frame = +2

Query: 266 IGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYD 445
           IGTH G FHCDE  ACFMLK LPQ+KD  I+RTRD  +L  CDI+VDVG +FDH K+RYD
Sbjct: 5   IGTHSGKFHCDEAFACFMLKQLPQFKDHSILRTRDAAQLEKCDIIVDVGGIFDHSKQRYD 64

Query: 446 HHQAGFNETL 475
           HHQ GF +T+
Sbjct: 65  HHQRGFTDTM 74



 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 21/43 (48%), Positives = 29/43 (67%)
 Frame = +3

Query: 513 KLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLK*FTRSYESFI 641
           KLSSAGLVYA+YG ++I Q+   + S +  DL  + R YE F+
Sbjct: 85  KLSSAGLVYAHYGREVINQILGGNVSSSMIDLF-YHRLYEQFV 126


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
            protein W09B6.1a protein.
          Length = 2054

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 329  LPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKR 439
            L +  DAEI++ R  N LN+C +V  + +++  EK R
Sbjct: 1396 LTEISDAEILKKRSANALNNCGMVAWIMTLYTPEKPR 1432


>Z78062-1|CAB01495.1|  447|Caenorhabditis elegans Hypothetical
           protein F16D3.1 protein.
          Length = 447

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 96  CVETLNNE-FYNLIKYNVTYRNITYVMLNRILPRTCSLLNSASYNF 230
           C   ++NE  Y + K N+  R+ TY  LNR+L +  S + +AS  F
Sbjct: 200 CSFIMDNEAIYEITKVNLGVRSPTYTHLNRLLAQVVSSI-TASLRF 244


>AF022967-12|AAB69873.2|  467|Caenorhabditis elegans Hypothetical
           protein C13A2.1 protein.
          Length = 467

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 42  LKYYIPN*IYHNR*HSTVCVETLNNEFYNLIKYNVTYRNITYVMLNRILPRT 197
           +KYY  +  Y NR     C   L  +F    K N    N+TY  + ++LP T
Sbjct: 400 MKYY--DLYYFNRRSGITCPGPLYCKFKQHPKINCMQANVTYSSMRKLLPIT 449


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,173,596
Number of Sequences: 27780
Number of extensions: 255060
Number of successful extensions: 580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)