Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1067
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49320.1 68416.m05392 expressed protein contains Pfam profile...    95   5e-20
At5g41970.1 68418.m05110 expressed protein contains Pfam profile...    91   4e-19
At1g32770.1 68414.m04040 no apical meristem (NAM) family protein...    27   8.0  
At1g02205.2 68414.m00154 CER1 protein identical to maize gl1 hom...    27   8.0  
At1g02205.1 68414.m00153 CER1 protein identical to maize gl1 hom...    27   8.0  

>At3g49320.1 68416.m05392 expressed protein contains Pfam profile
           PF03690: Uncharacterised protein family (UPF0160)
          Length = 354

 Score = 94.7 bits (225), Expect = 5e-20
 Identities = 39/80 (48%), Positives = 54/80 (67%)
 Frame = +2

Query: 230 SSLLFVKYLKMKIGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDV 409
           SS     +   ++GTH+G FHCDE LACF+L+   ++ DA+I+RTRD   L   D  +DV
Sbjct: 22  SSNFRASFSTKRVGTHNGTFHCDEALACFILRRSNRFSDAQIVRTRDHQVLEKLDAALDV 81

Query: 410 GSVFDHEKKRYDHHQAGFNE 469
           G V+D + +RYDHHQ GF+E
Sbjct: 82  GGVYDPQSERYDHHQKGFSE 101



 Score = 31.5 bits (68), Expect = 0.49
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 513 KLSSAGLVYAYYGEDIIQQLKEESTSLTNEDL-K*FTRSYESFI 641
           KLSSAGLVY +YG +II   KE      + D+ + F   Y++FI
Sbjct: 110 KLSSAGLVYKHYGLEIIS--KELQLEQRHPDVFRLFLAVYKNFI 151


>At5g41970.1 68418.m05110 expressed protein contains Pfam profile
           PF03690: Uncharacterised protein family (UPF0160)
          Length = 346

 Score = 91.5 bits (217), Expect = 4e-19
 Identities = 39/79 (49%), Positives = 54/79 (68%)
 Frame = +2

Query: 263 KIGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRY 442
           K+GTH+G FHCDE L CFM++ + ++  A+I+R+RD   L + D V+DVG V+D E  RY
Sbjct: 25  KVGTHNGSFHCDEALGCFMIRLVDKFSGADIVRSRDPKILAELDAVLDVGGVYDPEHDRY 84

Query: 443 DHHQAGFNETLSP*GLNSE 499
           DHHQ GF E     G N++
Sbjct: 85  DHHQKGFEEVFGH-GFNTK 102



 Score = 33.1 bits (72), Expect = 0.16
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +3

Query: 513 KLSSAGLVYAYYGEDIIQQLKEESTSLTNED-LK*FTRSYESFI 641
           KLSSAGLVY ++G++II   KE +    + D L+ F   Y+SF+
Sbjct: 102 KLSSAGLVYKHFGKEII--AKELNVEQDHPDVLRLFLAVYKSFM 143


>At1g32770.1 68414.m04040 no apical meristem (NAM) family protein
           similar to OsNAC7 protein GB:BAA89801 GI:6730944 from
           [Oryza sativa]
          Length = 358

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
 Frame = +2

Query: 296 DEVLACFMLKNLPQYK-DAEIIRTRDLNKLNDCDIVVD--VGSV-------FDHEKKRY 442
           +E+L  ++ K +   K D ++IR  DLNKL   DI  +  +GS        F H+ K+Y
Sbjct: 27  EELLHYYLRKKVNSQKIDLDVIREVDLNKLEPWDIQEECRIGSTPQNDWYFFSHKDKKY 85


>At1g02205.2 68414.m00154 CER1 protein identical to maize gl1
           homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467
           from [Arabidopsis thaliana]
          Length = 625

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = +3

Query: 69  YHNR*HSTVCVETLNNEFYNLIKYNVTYRNITYVMLNRILPRTCSLLNSASY 224
           YH+  HS++  E + +  +   ++   +      +L  +L +T S+++ A Y
Sbjct: 158 YHSHHHSSIVTEPITSVIHPFAEHIAYFILFAIPLLTTLLTKTASIISFAGY 209


>At1g02205.1 68414.m00153 CER1 protein identical to maize gl1
           homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467
           from [Arabidopsis thaliana]
          Length = 580

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = +3

Query: 69  YHNR*HSTVCVETLNNEFYNLIKYNVTYRNITYVMLNRILPRTCSLLNSASY 224
           YH+  HS++  E + +  +   ++   +      +L  +L +T S+++ A Y
Sbjct: 158 YHSHHHSSIVTEPITSVIHPFAEHIAYFILFAIPLLTTLLTKTASIISFAGY 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,195,553
Number of Sequences: 28952
Number of extensions: 230838
Number of successful extensions: 572
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)