Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1066
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 59 6e-10
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 52 9e-08
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 46 6e-06
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 41 2e-04
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 36 0.004
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 35 0.012
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 31 0.19
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 29 0.76
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 27 1.8
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc... 27 2.3
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 27 2.3
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 3.1
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe... 26 4.1
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 5.4
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 58.8 bits (136), Expect = 6e-10
Identities = 26/41 (63%), Positives = 30/41 (73%)
Frame = +3
Query: 129 KLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDVDR 251
KLVVVDF ATWC PC+ IAP FEQ + A F+KVDVD+
Sbjct: 19 KLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQ 59
Score = 39.5 bits (88), Expect = 4e-04
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 248 QMPDTASAQGVSAMPTFIFYRNRTKIDRLEGGNTTVLENKVRSVL 382
Q+ + A+ GV AMP+F Y+N KI+ + G N LE +++ L
Sbjct: 59 QLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIKANL 103
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 51.6 bits (118), Expect = 9e-08
Identities = 45/150 (30%), Positives = 64/150 (42%), Gaps = 7/150 (4%)
Frame = +3
Query: 81 IQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKF--PRAVFLKVDVDRC 254
I++ H+ + + +G + VD A WC PC+ I+P F QL +K+ P+ VF KV+VD
Sbjct: 6 IRSYQHWISTIPKSG--YLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDE- 62
Query: 255 PIQRVLRASVQCPHSFSTETGPKSTD*KEAI---LLY*KTKL--DQYYGSDVAEEDEDNT 419
Q V+ +F K D L K L + G+
Sbjct: 63 QRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKVALISSKATGTGALASSSSAP 122
Query: 420 VAGHMDLITFITKSECECLNEADDHPLAQA 509
V G L I + ECLN+ DDH L A
Sbjct: 123 VKGFASLQGCIENPQLECLNQQDDHDLKSA 152
Score = 42.7 bits (96), Expect = 4e-05
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +2
Query: 512 TNDRGYLASYCDEQLIINISFNQLVKLHSIKI---KGPADKGPKSIKLF 649
+N +L S DEQL+I I F ++VK+HSI I KG PK+IKL+
Sbjct: 155 SNPSSFLESDVDEQLMIYIPFLEVVKVHSIAITPVKGETSSAPKTIKLY 203
Score = 42.3 bits (95), Expect = 6e-05
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +2
Query: 263 ASAQGVSAMPTFIFYRNRTKIDRLEGGNTTVLENKV 370
AS GV AMPTF+F+ N +ID L G N L+ KV
Sbjct: 67 ASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKV 102
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 45.6 bits (103), Expect = 6e-06
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +3
Query: 129 KLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDVDR 251
K+ VVDF A WC PC+ + PF E+L + +A F+ V+ D+
Sbjct: 36 KVTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADK 76
Score = 31.1 bits (67), Expect = 0.14
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 257 DTASAQGVSAMPTFIFYRNRTKIDRLEGGNTTVLEN 364
D A GV A+PT + +R ++DR+ G + L +
Sbjct: 79 DIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSS 114
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 40.7 bits (91), Expect = 2e-04
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +3
Query: 99 FQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDVDR 251
FQ + N ++++++F A W PC+++ F+Q AVFLK++ ++
Sbjct: 11 FQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAVFLKIEAEK 61
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 120 AGTKLVVVDFTATWCPPCQRIAPFFEQLPAKF 215
A K +++F ATWC C+ +AP +E+L A F
Sbjct: 37 ASKKGALIEFYATWCGHCKSLAPVYEELGALF 68
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 129 KLVVVDFTATWCPPCQRIAPFFEQLPAKF---PRAVFLKVDVD 248
K V+V+F A WC C+R+AP +E L F P +K++ D
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKINAD 201
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 34.7 bits (76), Expect = 0.012
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 126 TKLVVVDFTATWCPPCQRIAPFFEQLPAKF 215
TK V+V+F A WC C+ +AP +E+L ++
Sbjct: 373 TKDVLVEFYAPWCGHCKNLAPTYEKLAEEY 402
Score = 30.7 bits (66), Expect = 0.19
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 129 KLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDVD 248
K+++V F A WC C+ +AP +E + + V+VD
Sbjct: 40 KVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVD 79
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 30.7 bits (66), Expect = 0.19
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 66 GLATVIQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQL 203
G T+ N +F+ + G LVV F A WC C+++ P +++L
Sbjct: 30 GSNTIELNSKNFRKFVKAKGPSLVV--FYAPWCGYCKKLVPTYQKL 73
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.76
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 182 NPLARWTPSCCKVHND*LGSSVSHFSLE 99
NPL RWTP K H G+S S + ++
Sbjct: 442 NPLKRWTPDQAKNHPFITGASFSQYCID 469
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = -1
Query: 331 SVDFGPVSVENECGHCTDALSTRCIGHLSTSTLRNTALGNFAGSCSKKGAILW 173
S+DF +++ GH S + H T + A+G++ C+K I W
Sbjct: 170 SIDFPYLNILVSGGHTMLVYSNSLLNHEIIVTTSDIAVGDYLDKCAKYLGIPW 222
>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +2
Query: 491 SSTCPSLTNDRGYLASYCD-----EQLIINISFNQLVKLHSIKI 607
SS CP+L ++ + S+ D E L+ + QL +LH KI
Sbjct: 327 SSVCPTLEKEKSLVISFVDLPSFLESLLASNILKQLSRLHFTKI 370
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 420 VAGHMDLITFITKSECECLNEADDHP 497
V H+D I FITKS C + E D P
Sbjct: 1285 VVNHIDRIMFITKSLCGEIFEIDKWP 1310
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 157 LGVHRAKGLPLFSSSYQQSFREQYF 231
LGV+R KGL FSS+++ EQ+F
Sbjct: 471 LGVNRYKGLFYFSSAFRPCPIEQHF 495
>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 233
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 99 FQTEMANAGTKL-VVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKV 239
+ E+ +A ++ VVV P C+ +A E+L +P+ F+K+
Sbjct: 97 YTAEVTDASKEVFVVVHMFQDSLPACKLLAAILERLAPMYPQIKFVKI 144
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 331 SVDFGPVSVENECGHCTDALSTRCIGHLSTSTL 233
SV+ PVSV+NE H S+R + TL
Sbjct: 138 SVELNPVSVDNEVAHGLAVFSSRDAAASARDTL 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,059
Number of Sequences: 5004
Number of extensions: 45835
Number of successful extensions: 134
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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