Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1066
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0) 109 2e-24
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 83 2e-16
SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07) 48 5e-06
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0) 40 0.002
SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27) 40 0.002
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_21263| Best HMM Match : Thioredoxin (HMM E-Value=0.00093) 37 0.016
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 36 0.021
SB_6126| Best HMM Match : Thioredoxin (HMM E-Value=0.021) 36 0.021
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0) 35 0.066
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 35 0.066
SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06) 35 0.066
SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019) 33 0.20
SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05) 32 0.35
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19) 31 1.1
SB_21941| Best HMM Match : Kinesin (HMM E-Value=0) 30 1.9
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13) 29 2.5
SB_13486| Best HMM Match : DUF1530 (HMM E-Value=2.3) 29 2.5
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0) 29 2.5
SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21) 28 5.7
SB_53006| Best HMM Match : PH (HMM E-Value=1.8e-10) 28 7.5
SB_6116| Best HMM Match : Patched (HMM E-Value=0.025) 27 9.9
>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
Length = 308
Score = 109 bits (262), Expect = 2e-24
Identities = 59/148 (39%), Positives = 83/148 (56%)
Frame = +3
Query: 66 GLATVIQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDV 245
G V++ D+ F E+ NAGTKLVV DFTA+WC PC+ IAP + L K+ +AVFLK+DV
Sbjct: 7 GNVKVLELDSQFTAELTNAGTKLVVADFTASWCGPCKSIAPVYSGLSEKYKQAVFLKIDV 66
Query: 246 DRCPIQRVLRASVQCPHSFSTETGPKSTD*KEAILLY*KTKLDQYYGSDVAEEDEDNTVA 425
D C + P + K + + A + + ++ G D E+ V
Sbjct: 67 DVCQELAAKQGVTAMPTFQFFKNKVKVDEVRGADPKALEDAIKKWIG-DGEEDGAGCGVK 125
Query: 426 GHMDLITFITKSECECLNEADDHPLAQA 509
GH+DL ++I KS CECLNE ++HPL A
Sbjct: 126 GHVDLNSYINKSGCECLNEDNEHPLNDA 153
Score = 76.6 bits (180), Expect = 2e-14
Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Frame = +2
Query: 257 DTASAQGVSAMPTFIFYRNRTKIDRLEGGNTTVLENKVRSVLWLXXXXXXXXXXXXWTYG 436
+ A+ QGV+AMPTF F++N+ K+D + G + LE+ ++ +
Sbjct: 71 ELAAKQGVTAMPTFQFFKNKVKVDEVRGADPKALEDAIKKWIGDGEEDGAGCGVKGHVDL 130
Query: 437 SYYIHYQE*V*MFK*G**SSTCPSLTNDRGYLASYCDEQLIINISFNQLVKLHSIKIKGP 616
+ YI+ + + +LT G+L S CDEQL+I++SFNQ VKLHS+K++ P
Sbjct: 131 NSYINKSGCECLNEDNE-HPLNDALTKGPGFLQSDCDEQLLISLSFNQPVKLHSMKLQAP 189
Query: 617 AD-KGPKSIKLF 649
D + PK +KLF
Sbjct: 190 NDGQAPKVVKLF 201
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 82.6 bits (195), Expect = 2e-16
Identities = 35/65 (53%), Positives = 46/65 (70%)
Frame = +3
Query: 66 GLATVIQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDV 245
G V+++D+ F E+ AG++LVV+DFTATWC PC+ IAP F L KF VFLKVDV
Sbjct: 8 GNVIVVEDDSFFSVEIERAGSRLVVIDFTATWCGPCKSIAPVFTNLSMKFMDVVFLKVDV 67
Query: 246 DRCPI 260
D+C +
Sbjct: 68 DQCQL 72
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/40 (50%), Positives = 27/40 (67%)
Frame = +2
Query: 260 TASAQGVSAMPTFIFYRNRTKIDRLEGGNTTVLENKVRSV 379
TA + G+ AMPTF FY N+ KID L G + LENK++ +
Sbjct: 73 TAESCGIRAMPTFHFYHNKAKIDELRGADPGALENKIKEL 112
>SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +3
Query: 81 IQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLP-AKFPRAVFLKVDVDRCP 257
I+ A F + + N KLVV+DF A WC PC++I P F+++ +F F K+DVD
Sbjct: 15 IEERAEFNSVINNTKDKLVVIDFYAEWCGPCRQIKPKFKKMALEEFKDVFFAKIDVDELE 74
Query: 258 IQRVLRAS 281
+++++ A+
Sbjct: 75 LEKLVGAN 82
>SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07)
Length = 438
Score = 48.4 bits (110), Expect = 5e-06
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +3
Query: 129 KLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDVD 248
++ +DFTATWC PC+ I P FE++ +F KVDVD
Sbjct: 12 EVAAIDFTATWCGPCRMIGPKFEEMAKEFKGVKCAKVDVD 51
>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 295
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +3
Query: 108 EMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRA---VFLKVDVD 248
E+ N G K +V+F A WC C+++AP +EQL + ++ + KVD D
Sbjct: 34 EVVN-GEKFALVEFYAPWCGHCKQLAPTYEQLGEAYTQSSDVIIAKVDAD 82
>SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)
Length = 472
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Frame = +3
Query: 87 NDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFE----QLPAKFPRAVFLKV--DVD 248
ND +F + + V+VDF A WC CQR++P F+ QL P F KV +D
Sbjct: 57 NDQNFNETIKK--NEYVLVDFYAPWCSDCQRLSPLFDTAALQLRDNNPSLRFAKVIYSID 114
Query: 249 RCPI 260
C +
Sbjct: 115 ECKV 118
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 87 NDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQL 203
+D++F E A K V+VDF A WC C+++AP ++ +
Sbjct: 140 DDSNF--EPAVQKHKFVLVDFYAPWCFHCKKMAPDYKDV 176
>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = +3
Query: 87 NDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQL 203
N +F T++ A VVDF A WC PC R AP +EQL
Sbjct: 439 NSKNFFTDVL-ASEDAWVVDFYAPWCGPCMRFAPKYEQL 476
Score = 35.1 bits (77), Expect = 0.050
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 141 VDFTATWCPPCQRIAPFFEQLPAKF 215
VDF A WCPPC R+ P + + F
Sbjct: 307 VDFFAPWCPPCMRLLPEYRKAARSF 331
>SB_21263| Best HMM Match : Thioredoxin (HMM E-Value=0.00093)
Length = 148
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +3
Query: 129 KLVVVDFTATWCPPCQRIAP----FFEQLPAKFPRAVFLKVDVDR 251
K++ V F+A WCPPC++ P F+E+L + V + V DR
Sbjct: 26 KVIAVYFSAHWCPPCRQFTPILKDFYEELGGEEGDLVIIFVSSDR 70
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 108 EMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKF 215
E+A K V V+F A WC C+++AP ++QL K+
Sbjct: 396 EVARNKDKNVFVEFYAPWCGHCKQLAPIWDQLGEKY 431
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 114 ANAGTKLVVVDFTATWCPPCQRIAP 188
A A K V+V+F A WC C+ +AP
Sbjct: 37 AVAANKHVLVEFYAPWCGHCKALAP 61
>SB_6126| Best HMM Match : Thioredoxin (HMM E-Value=0.021)
Length = 293
Score = 36.3 bits (80), Expect = 0.021
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 129 KLVVVDFTATWCPPCQRIAPFFE 197
K+V + F+A+WCPPCQ+ P +
Sbjct: 155 KVVAIYFSASWCPPCQKFTPLLK 177
>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 362
Score = 34.7 bits (76), Expect = 0.066
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 90 DAHFQTEMANAGTKLVVVDFTATWCPPCQRIAP 188
D +F+ E+ N+ L +V+F A WC CQR+AP
Sbjct: 86 DTNFEKEVLNS-KDLWLVEFFAPWCGHCQRLAP 117
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 34.7 bits (76), Expect = 0.066
Identities = 14/36 (38%), Positives = 26/36 (72%)
Frame = +3
Query: 90 DAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFE 197
D++F++ +A G +++V+F A WC C+R+AP +E
Sbjct: 545 DSNFKSGVA--GKDIMLVEFFAPWCGHCKRLAPEYE 578
>SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06)
Length = 70
Score = 34.7 bits (76), Expect = 0.066
Identities = 14/36 (38%), Positives = 26/36 (72%)
Frame = +3
Query: 90 DAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFE 197
D++F++ +A G +++V+F A WC C+R+AP +E
Sbjct: 20 DSNFKSGVA--GKDIMLVEFFAPWCGHCKRLAPEYE 53
>SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019)
Length = 415
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +3
Query: 108 EMANAGT---KLVVVDFTATWCPPCQRIAP 188
E+ NAG K+V + F+A WCPPC+ P
Sbjct: 164 EVINAGDLKGKIVGIYFSAHWCPPCRAFTP 193
Score = 31.1 bits (67), Expect = 0.81
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Frame = +3
Query: 78 VIQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAP----FFEQLPAKFPRA---VFLK 236
++ E + K+V + F+A WCPPC+ P F++ +K A VF+
Sbjct: 13 LVGKHGQISVESLSGEGKIVGLYFSAHWCPPCRGFTPKLVEFYQNYRSKTNNALEVVFIS 72
Query: 237 VDVD 248
D D
Sbjct: 73 SDKD 76
>SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05)
Length = 215
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 99 FQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLK 236
F ++++ L VV F A W P C ++ E+L + P F+K
Sbjct: 12 FDRILSSSSNVLAVVHFFAPWAPHCNQMNDVLEELAKENPHVNFIK 57
>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +3
Query: 105 TEMANAGTKLVVVDFTATWCPPCQRIAPFFEQ 200
TE+ N + L++V+F A WC C+++AP +E+
Sbjct: 187 TEVVNRES-LMLVEFFAPWCGHCKQLAPEYEK 217
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +3
Query: 132 LVVVDFTATWCPPCQRIAPFFEQLPAKF----PRAVFLKVD 242
+++V+F A WC C+ +AP + + K P F K+D
Sbjct: 80 IILVEFYAPWCGHCKSLAPEYAKAAKKMKLNDPPVPFAKMD 120
>SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 211
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 527 YLASYCDEQLIINISFNQLVKLHS-IKIKGPADKGPKSIKLF 649
++ S DE+L+ NI F VKL + I I G + P +KLF
Sbjct: 67 FVESDVDEELLFNIPFTGSVKLKALIVIGGEGGEHPSEVKLF 108
>SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19)
Length = 335
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 123 GTKLVVVDFTATWCPPCQRIAPFFEQLPAKF 215
G+K V + F A W CQRI F+Q+ +F
Sbjct: 42 GSKFVFIFFYAPWDDHCQRILQIFDQVADEF 72
>SB_21941| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 791
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 263 LYRASVYVYFEKYCSRKLCW*LLEKRGNPLARWTP 159
L+RA VY YF K+C L +E +G R+TP
Sbjct: 96 LWRAKVYTYFNKHCQSTLHRSTMEDKGQ---RYTP 127
>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
Length = 3035
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Frame = -1
Query: 307 VENECGHCTDALSTRCIGHLSTSTLRNTALGNF----AGSCSKKGAILWHGGHQVAVKST 140
+ +EC C+D L T C + T + +F AG S G + VAV +T
Sbjct: 725 IHDECSECSDTLPTACTSTMRCLRYSGTGVADFYTICAGQSSDSGGLKVISQTPVAVNNT 784
>SB_13486| Best HMM Match : DUF1530 (HMM E-Value=2.3)
Length = 222
Score = 29.5 bits (63), Expect = 2.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 129 KLVVVDFTATWCPPCQ 176
K+ ++DF A+WC PC+
Sbjct: 178 KVTIIDFWASWCQPCR 193
>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 612
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 122 WNQVSRCGLYSNLVSTVPKDCPF 190
W GLYS LV+TV +D PF
Sbjct: 475 WTNEGGRGLYSGLVATVARDAPF 497
>SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 129 KLVVVDFTATWCPPCQRIAPFFEQ 200
++++VDF A WC C + P +E+
Sbjct: 40 EVMLVDFYAPWCSDCDNLRPKYEK 63
>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 132 LVVVDFTATWCPPCQRIAPFFE 197
+++VDF A WC CQ + P E
Sbjct: 39 IMLVDFYAPWCHHCQELLPQLE 60
>SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)
Length = 186
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 141 VDFTATWCPPCQRIAPFFEQLPAKF 215
V F A WC C ++AP +E+L F
Sbjct: 111 VKFYAPWCIHCIKLAPIWERLAEDF 135
>SB_53006| Best HMM Match : PH (HMM E-Value=1.8e-10)
Length = 181
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 165 PPCQRIAPFFEQLPAKFPRAVFLKVDVDRCPIQRVLRASVQCPHSFSTET 314
P C + P F+ L AK + + + D+ V+ A+++ ST+T
Sbjct: 78 PHCFALGPLFDNLMAKRTYYISCESEADKLSWMEVIGAAIESDFGSSTDT 127
>SB_6116| Best HMM Match : Patched (HMM E-Value=0.025)
Length = 831
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 233 EKYCSRKLCW*LLEKRGNPLARWTPSCCKV 144
EKYCSR+ C +KR + + CCKV
Sbjct: 365 EKYCSRRAC----KKREDEASYMESCCCKV 390
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,967,719
Number of Sequences: 59808
Number of extensions: 350733
Number of successful extensions: 831
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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