Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1066
         (649 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1 prot...    60   8e-11
AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.            24   4.8  
AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic acetylch...    23   8.3  
AY505417-1|AAR90328.1|  206|Anopheles gambiae superoxide dismuta...    23   8.3  

>AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1
           protein.
          Length = 107

 Score = 59.7 bits (138), Expect = 8e-11
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
 Frame = +3

Query: 78  VIQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKF-PRAVFLKVDVDRC 254
           ++++   F  ++  AG +LVVVDF ATWC PC+ IAP  E+   K+  + V +KVDVD C
Sbjct: 4   MVKDSEDFNNKLEAAGDQLVVVDFFATWCGPCKVIAPKLEEFQNKYADKIVVVKVDVDEC 63



 Score = 31.5 bits (68), Expect = 0.024
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +2

Query: 257 DTASAQGVSAMPTFIFYRNRTKIDRLEGGNTTVLENKVR 373
           + A+   +++MPTF+F + +  + +  G N   LEN ++
Sbjct: 65  ELAAQYNIASMPTFLFIKRKEVVGQFSGANAEKLENFIQ 103


>AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.
          Length = 722

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -1

Query: 331 SVDFGPVSVENECGHCTDALSTRCIGHLSTSTLRNTALGN 212
           + DF    +EN  G+    LS + + + S   L+    GN
Sbjct: 348 AADFSAGEIENNIGNLQYQLSNKFLANFSNMRLKKINRGN 387


>AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 9 protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 290 PTFIFYRNRTKIDRLEGGNTTVLENKVRSVLWL 388
           P  + Y N    D+   G+T VL      VLW+
Sbjct: 121 PDVVLYNNAGGSDQHHYGDTNVLVYSEGKVLWV 153


>AY505417-1|AAR90328.1|  206|Anopheles gambiae superoxide dismutase
           1 protein.
          Length = 206

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 139 TTNLVPALAISVW 101
           TT LVP L I VW
Sbjct: 180 TTGLVPLLGIDVW 192


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 623,496
Number of Sequences: 2352
Number of extensions: 11007
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)