Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1065
         (608 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3J1D0 Cluster: WblQ protein; n=1; Flavobacteria bacter...    35   1.3  
UniRef50_A0BS32 Cluster: Chromosome undetermined scaffold_124, w...    35   1.3  
UniRef50_Q54FB8 Cluster: Putative uncharacterized protein; n=1; ...    33   4.0  
UniRef50_O96201 Cluster: Putative uncharacterized protein PFB054...    33   7.0  

>UniRef50_A3J1D0 Cluster: WblQ protein; n=1; Flavobacteria bacterium
           BAL38|Rep: WblQ protein - Flavobacteria bacterium BAL38
          Length = 387

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = -2

Query: 409 KDISDNYLSKLSSNKLAVHSXNLVHVKHLFRLIIITYHNETSLQNY 272
           + I+  YLS++ ++K+ + S +L    H+F L +I   N T L+NY
Sbjct: 279 RSIAKRYLSEIKNDKITLPSWDLSK-NHVFHLFVIRTSNRTELKNY 323


>UniRef50_A0BS32 Cluster: Chromosome undetermined scaffold_124, whole
            genome shotgun sequence; n=2; Alveolata|Rep: Chromosome
            undetermined scaffold_124, whole genome shotgun sequence
            - Paramecium tetraurelia
          Length = 1278

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
 Frame = -2

Query: 493  YTSTYETVKHYSIVEF--D*FIVSSIAFDNKDISDNYLSKLSSNKLAVHSXNLVHVKHLF 320
            ++  +    HY+ ++   + F + S   D  D  D+ L K  SN LA++   LV++    
Sbjct: 754  FSGFFNNQPHYNHLDVMREIFSIFSQHIDKVDNVDSLLGKYKSNPLAINPNELVYINDPH 813

Query: 319  RLIIITYHNETSLQNYNTLAHV-NNTIKNEGT 227
            RLI  +      +Q Y     V N  ++N+ T
Sbjct: 814  RLIQYSTRTGVDIQQYIQRQMVFNKRLQNDST 845


>UniRef50_Q54FB8 Cluster: Putative uncharacterized protein; n=1;
            Dictyostelium discoideum AX4|Rep: Putative
            uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1777

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
 Frame = -2

Query: 490  TSTYETVKHYSIVEFD*F-IVSSIA---FDNKD---ISDNYLSKLSSNKLAVHSXNLV-- 338
            T  YE++K YS +  D F IV SI    F +KD   +   +++ L+   L++   +++  
Sbjct: 1528 TLLYESLKEYSTIRIDIFLIVQSIIPLFFKSKDGDYLIKTFIAILNFKLLSLKDNSIIAR 1587

Query: 337  HVKHLFRLIIITYHNETSLQNYN 269
              K  F+ I +  +NE +L+NY+
Sbjct: 1588 KFKKFFQCINLPINNEFNLENYS 1610


>UniRef50_O96201 Cluster: Putative uncharacterized protein PFB0540w;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFB0540w - Plasmodium falciparum
           (isolate 3D7)
          Length = 1844

 Score = 32.7 bits (71), Expect = 7.0
 Identities = 19/64 (29%), Positives = 36/64 (56%)
 Frame = -2

Query: 409 KDISDNYLSKLSSNKLAVHSXNLVHVKHLFRLIIITYHNETSLQNYNTLAHVNNTIKNEG 230
           KDI++N ++  + NKL  +  N  ++ ++   I  TY+ + +L N N   + NN I ++G
Sbjct: 733 KDINNNNITVSNKNKLMNNYINDNNIMNMEGSINETYNFDGTLNNKNVSNNNNNDIHDKG 792

Query: 229 TRST 218
             +T
Sbjct: 793 VLNT 796


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 568,342,784
Number of Sequences: 1657284
Number of extensions: 10581709
Number of successful extensions: 24100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24094
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)