Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1065
         (608 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   4.6  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    22   4.6  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    22   4.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   4.6  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 33  DGGE*PHRPTTH 68
           DGGE  H P TH
Sbjct: 398 DGGEVAHLPNTH 409


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 518 WLIYFLNILLRKGAGTNSPIVSRI 589
           +L YF NIL RK       I+S+I
Sbjct: 83  FLTYFFNILFRKKLLNAVKILSKI 106


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 518 WLIYFLNILLRKGAGTNSPIVSRI 589
           +L YF NIL RK       I+S+I
Sbjct: 79  FLTYFFNILFRKKLLNAVKILSKI 102


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 33  DGGE*PHRPTTH 68
           DGGE  H P TH
Sbjct: 346 DGGEVAHLPNTH 357


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,697
Number of Sequences: 336
Number of extensions: 2824
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)