Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1065
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0826 - 7629892-7629964,7630052-7630135,7630216-7630314,763...    27   8.8  

>12_01_0826 -
           7629892-7629964,7630052-7630135,7630216-7630314,
           7630391-7630449,7630804-7630888,7630961-7631058,
           7631209-7631355,7631433-7631525,7631642-7631770,
           7631859-7631912,7632133-7632309,7632396-7632481,
           7634234-7634324,7634433-7634531,7634618-7634694,
           7634784-7634952,7639551-7639642,7639712-7639825,
           7640933-7641038,7641133-7641183,7641315-7641416,
           7642581-7642655,7642768-7642965,7642998-7643123
          Length = 827

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 21  KSPDDGGE*PHRPTTHCI 74
           ++PDDG    HRPT  CI
Sbjct: 677 RTPDDGAAPDHRPTNACI 694


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,108,812
Number of Sequences: 37544
Number of extensions: 281846
Number of successful extensions: 593
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)