BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1065 (608 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 12_01_0826 - 7629892-7629964,7630052-7630135,7630216-7630314,763... 27 8.8 >12_01_0826 - 7629892-7629964,7630052-7630135,7630216-7630314, 7630391-7630449,7630804-7630888,7630961-7631058, 7631209-7631355,7631433-7631525,7631642-7631770, 7631859-7631912,7632133-7632309,7632396-7632481, 7634234-7634324,7634433-7634531,7634618-7634694, 7634784-7634952,7639551-7639642,7639712-7639825, 7640933-7641038,7641133-7641183,7641315-7641416, 7642581-7642655,7642768-7642965,7642998-7643123 Length = 827 Score = 27.5 bits (58), Expect = 8.8 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +3 Query: 21 KSPDDGGE*PHRPTTHCI 74 ++PDDG HRPT CI Sbjct: 677 RTPDDGAAPDHRPTNACI 694 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,108,812 Number of Sequences: 37544 Number of extensions: 281846 Number of successful extensions: 593 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 584 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 593 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1454766756 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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