Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1065
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2903| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              29   2.9  
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)                   29   2.9  
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)                  29   2.9  
SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)                     29   2.9  
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.9  
SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)           29   2.9  
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)                       29   2.9  
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_4159| Best HMM Match : Vpu (HMM E-Value=2)                          29   2.9  
SB_7934| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_46903| Best HMM Match : Toxin_15 (HMM E-Value=0)                    28   5.1  
SB_24487| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_14140| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_45580| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)                   27   9.0  
SB_13182| Best HMM Match : Pox_A32 (HMM E-Value=0.033)                 27   9.0  

>SB_2903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/54 (37%), Positives = 23/54 (42%)
 Frame = +1

Query: 442 NRIRQYCNVLLFHRYLCITLIN*SYMVDIFSEYITSKRGRYQFAYSESYYNSLA 603
           +R+   C V L    LC  LI         S    +     QFA  ESYYNSLA
Sbjct: 17  SRVSGCCKVYLNVNVLCPVLIEFLQPGGSTSSRAAATAVELQFALYESYYNSLA 70


>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2

Query: 601 PVNCNTTHYR 572
           PVNCNTTHYR
Sbjct: 12  PVNCNTTHYR 21


>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2

Query: 601 PVNCNTTHYR 572
           PVNCNTTHYR
Sbjct: 68  PVNCNTTHYR 77


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2

Query: 601 PVNCNTTHYR 572
           PVNCNTTHYR
Sbjct: 636 PVNCNTTHYR 645


>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2

Query: 601 PVNCNTTHYR 572
           PVNCNTTHYR
Sbjct: 47  PVNCNTTHYR 56


>SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)
          Length = 257

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2

Query: 601 PVNCNTTHYR 572
           PVNCNTTHYR
Sbjct: 9   PVNCNTTHYR 18


>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
          Length = 117

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2

Query: 601 PVNCNTTHYR 572
           PVNCNTTHYR
Sbjct: 49  PVNCNTTHYR 58


>SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)
          Length = 237

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2

Query: 601 PVNCNTTHYR 572
           PVNCNTTHYR
Sbjct: 86  PVNCNTTHYR 95


>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2

Query: 601  PVNCNTTHYR 572
            PVNCNTTHYR
Sbjct: 1887 PVNCNTTHYR 1896


>SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2

Query: 601 PVNCNTTHYR 572
           PVNCNTTHYR
Sbjct: 47  PVNCNTTHYR 56


>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2

Query: 601 PVNCNTTHYR 572
           PVNCNTTHYR
Sbjct: 9   PVNCNTTHYR 18


>SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2

Query: 601 PVNCNTTHYR 572
           PVNCNTTHYR
Sbjct: 29  PVNCNTTHYR 38


>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
          Length = 768

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2

Query: 601 PVNCNTTHYR 572
           PVNCNTTHYR
Sbjct: 41  PVNCNTTHYR 50


>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2

Query: 601 PVNCNTTHYR 572
           PVNCNTTHYR
Sbjct: 90  PVNCNTTHYR 99


>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2

Query: 601 PVNCNTTHYR 572
           PVNCNTTHYR
Sbjct: 68  PVNCNTTHYR 77


>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
          Length = 281

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2

Query: 601 PVNCNTTHYR 572
           PVNCNTTHYR
Sbjct: 79  PVNCNTTHYR 88


>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2

Query: 601 PVNCNTTHYR 572
           PVNCNTTHYR
Sbjct: 55  PVNCNTTHYR 64


>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
          Length = 779

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2

Query: 601 PVNCNTTHYR 572
           PVNCNTTHYR
Sbjct: 79  PVNCNTTHYR 88


>SB_7934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 304 TYHNETSLQNYNTLAHVNNTIKNEGTRST*RLRLLVNIPKRYAKCTRASGTI 149
           T+ N T  Q+Y+T+ H N T+      ST        + + Y+  T + GT+
Sbjct: 20  THSNGTVTQSYSTITHSNGTVAQSYCTST---HSHGTVAQSYSTSTHSHGTV 68


>SB_46903| Best HMM Match : Toxin_15 (HMM E-Value=0)
          Length = 361

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 541 YIQKIYQPCMTNLSM*YTS-TYETVKHYSIVEF 446
           Y+  +Y P +TN  +   S + E +KHYS+++F
Sbjct: 230 YVVSVYDPNVTNDKIRIMSESKENIKHYSLMDF 262


>SB_24487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2

Query: 563 TNSPIVSRITIHW 601
           +NSP +SRITIHW
Sbjct: 74  SNSPYMSRITIHW 86


>SB_14140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 556 GRYQFAYSESYYNSLA 603
           G  QFA  ESYYNSLA
Sbjct: 51  GELQFALYESYYNSLA 66


>SB_45580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 556 GRYQFAYSESYYNSLA 603
           G  QFA  ESYYNSLA
Sbjct: 51  GELQFALYESYYNSLA 66


>SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)
          Length = 1264

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 493  YTSTYETVKHYSIVEFD*FIVSSIAFDNKDISDNYLSKLSSN 368
            +T T ET  HYS+      +  ++      +  NYL+K  SN
Sbjct: 949  FTYTRETYTHYSMASIAILVGGAVLNATAFVGGNYLAKFLSN 990


>SB_13182| Best HMM Match : Pox_A32 (HMM E-Value=0.033)
          Length = 745

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 493 YTSTYETVKHYSIVEFD*FIVSSIAFDNKDISDNYLSKLSSN 368
           +T T ET  HYS+      +  ++      +  NYL+K  SN
Sbjct: 601 FTYTRETYTHYSMASIAILVGGAVLNATAFVGGNYLAKFLSN 642


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,823,809
Number of Sequences: 59808
Number of extensions: 341150
Number of successful extensions: 2995
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2994
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)