Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1065
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04100.1 68416.m00434 MADS-box family protein contains Pfam p...    29   2.4  
At1g11040.1 68414.m01265 DNAJ chaperone C-terminal domain-contai...    28   4.2  
At3g06110.1 68416.m00701 dual specificity protein phosphatase fa...    28   5.6  
At5g66870.1 68418.m08430 LOB domain family protein / lateral org...    27   7.4  
At4g21590.1 68417.m03126 bifunctional nuclease, putative similar...    27   7.4  
At3g06110.2 68416.m00702 dual specificity protein phosphatase fa...    27   9.7  
At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1) domain...    27   9.7  

>At3g04100.1 68416.m00434 MADS-box family protein contains Pfam
           profile: PF00319 SRF-type transcription factor
           (DNA-binding and dimerisation domain)
          Length = 207

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 1   ADRARPPSRQTTAENDPIGPLLIVFQKR 84
           ADR + PSRQ   E D   PL+  ++KR
Sbjct: 78  ADRLKNPSRQEPLERDDTRPLVEAYKKR 105


>At1g11040.1 68414.m01265 DNAJ chaperone C-terminal
           domain-containing protein contains Pfam profile PF01556:
           DnaJ C terminal region
          Length = 438

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 241 KNEGTRST*RLRLLVNIPKRYAKCTRASGTIQSKCCAW 128
           K EG R   R+  LVN P++ ++  R+      K C+W
Sbjct: 400 KEEGKRGDLRITFLVNFPEKLSEEQRSMAYEVLKDCSW 437


>At3g06110.1 68416.m00701 dual specificity protein phosphatase
           family protein contains Pfam profile: PF00782 dual
           specificity phosphatase, catalytic domain
          Length = 157

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 395 ITNVFVIECYTRYDKLIEFDNTVMFYCFIG 484
           +  V+  ECY+  D+ I+    V+ +CF+G
Sbjct: 73  VIEVYFDECYSFIDQAIQSGGGVLVHCFMG 102


>At5g66870.1 68418.m08430 LOB domain family protein / lateral organ
           boundaries domain family protein (LBD36) identical to
           SP|Q9FKZ3 Putative LOB domain protein 36 {Arabidopsis
           thaliana}; similar to lateral organ boundaries (LOB)
           domain-containing proteins from Arabidopsis thaliana
          Length = 313

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 52  IGP--LLIVFQKRFKIMTPPAPSGPDSSKRNILTESCH 159
           +GP  +L + Q  F  + PP P  P SS  ++LT+  H
Sbjct: 111 VGPQAMLPILQPHFMSL-PPQPQRPSSSSASVLTQHHH 147


>At4g21590.1 68417.m03126 bifunctional nuclease, putative similar to
           bifunctional nuclease [Zinnia elegans]
           gi|4099833|gb|AAD00694
          Length = 294

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = -2

Query: 511 TNLSM*YTSTYETVKHYSIVEFD*FIVSSIAFDNKDISDNYLSKLSSNKLAVHSXN 344
           TN  M  +   +++ HY++ E   F+   +   ++ + + ++  L  NK+ VH  N
Sbjct: 115 TNQLMSTSENSQSIVHYNLTEALMFLSHYMGDIHQPLHEGFIGDLGGNKIKVHWYN 170


>At3g06110.2 68416.m00702 dual specificity protein phosphatase
           family protein contains Pfam profile: PF00782 dual
           specificity phosphatase, catalytic domain
          Length = 167

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 404 VFVIECYTRYDKLIEFDNTVMFYCFIG 484
           V+  ECY+  D+ I+    V+ +CF+G
Sbjct: 86  VYFDECYSFIDQAIQSGGGVLVHCFMG 112


>At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein contains Pfam profile PF00564:
           PB1 domain
          Length = 174

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +1

Query: 22  SRQTTAENDPIGPLLIVFQKRFKIMTPPAPSGPDSS----KRNILTESCHLRECI*HNVL 189
           S +TTA + P          + +  +PP+PS P++     +R+I    C++     HN L
Sbjct: 110 STRTTANSSPPPSTTSSSSSKSRSRSPPSPSTPETCPSCVERSIRNNGCYVHRSPSHNQL 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,082,598
Number of Sequences: 28952
Number of extensions: 226324
Number of successful extensions: 461
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)