Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1064
(621 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF322227-1|AAK01654.1| 782|Tribolium castaneum cell surface pro... 45 6e-07
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.8
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.8
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.8
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.8
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.8
AY884062-1|AAX84203.1| 712|Tribolium castaneum laccase 2B protein. 22 4.8
EF125544-1|ABL73928.1| 279|Tribolium castaneum obstractor B pro... 21 6.3
AM292352-1|CAL23164.1| 250|Tribolium castaneum gustatory recept... 21 6.3
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro... 21 8.3
AM292364-1|CAL23176.2| 353|Tribolium castaneum gustatory recept... 21 8.3
>AF322227-1|AAK01654.1| 782|Tribolium castaneum cell surface
protein chaoptin protein.
Length = 782
Score = 44.8 bits (101), Expect = 6e-07
Identities = 22/60 (36%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Frame = +3
Query: 255 LDLSKNKLSVLPDDLSK-LKHLKQLNLDSNKLQALPESLINLKKLEVLNISNNFVQTLPV 431
LD S N++S +P+DL + L +L+ ++ N+L++LP++L LE L++S+N + LP+
Sbjct: 301 LDTSHNRISEIPNDLFRFLGNLRIVDFSHNRLRSLPDNLFRETGLERLDVSHNLLGKLPL 360
Score = 34.7 bits (76), Expect = 6e-04
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Frame = +3
Query: 249 TKLDLSKNKL-SVLPDDLSKLKHLKQLNLDSNKLQALPE-SLINLKKLEVLNISNNFVQT 422
T++ S N + +V + L L+Q++LD N++++L + +NLK L+ LN+ N + T
Sbjct: 95 TEVYFSFNSVRNVQQHTFADLIQLEQIHLDDNRIESLERRAFMNLKSLKRLNLKGNKIAT 154
Query: 423 LPV-CLKNLNNLKQVYASNNN 482
+ +NL L+ + + N+
Sbjct: 155 IAYETFQNLPELEDLDLAYNS 175
Score = 33.1 bits (72), Expect = 0.002
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +3
Query: 255 LDLSKNKLSVLPDDLSKLKHLKQLNLDSNKLQALP---ESLINLKKLEVLNISNNFVQTL 425
+D S N+L LPD+L + L++L++ N L LP SL + + L L++S N + +L
Sbjct: 325 VDFSHNRLRSLPDNLFRETGLERLDVSHNLLGKLPLTSLSLASAQTLSELDLSWNSISSL 384
Score = 32.3 bits (70), Expect = 0.003
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +3
Query: 306 LKHLKQLNLDSNKLQALP-ESLINLKKLEVLNISNNFVQTL 425
LK LK+LNL NK+ + E+ NL +LE L+++ N + +L
Sbjct: 139 LKSLKRLNLKGNKIATIAYETFQNLPELEDLDLAYNSISSL 179
Score = 30.7 bits (66), Expect = 0.010
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 255 LDLSKNKLSVLPDDLS-KLKHLKQLNLDSNKLQALPESLINLKKLEVLNISNNFVQTL 425
L L+ N L + +++ + L+ LNLD N L A+P +L +L L++ N + TL
Sbjct: 471 LSLAFNSLPTVALEVAGNISSLRYLNLDYNDLSAVPIVTHSLTELRHLSLEGNPITTL 528
Score = 27.5 bits (58), Expect = 0.096
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +3
Query: 252 KLDLSKNKLSVLPDD-LSKLKHLKQLNLDSNKLQAL 356
+LDLS N+L +PD+ L+ LK+++L N ++ +
Sbjct: 46 ELDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTIEMI 81
Score = 25.4 bits (53), Expect = 0.39
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 490 FRNKYWIQSLDVLDLSHNKITEIP 561
FRN + L LD SHN+I+EIP
Sbjct: 292 FRNT---KKLQWLDTSHNRISEIP 312
Score = 23.8 bits (49), Expect = 1.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 517 LDVLDLSHNKITEIPY 564
L VLDLSHN + E+ +
Sbjct: 274 LQVLDLSHNSLYELDF 289
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 21.8 bits (44), Expect = 4.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 345 VYYYLNLIVSGVLI 304
+YY+ NLIV VLI
Sbjct: 212 LYYFFNLIVPCVLI 225
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 21.8 bits (44), Expect = 4.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 345 VYYYLNLIVSGVLI 304
+YY+ NLIV VLI
Sbjct: 212 LYYFFNLIVPCVLI 225
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 21.8 bits (44), Expect = 4.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 345 VYYYLNLIVSGVLI 304
+YY+ NLIV VLI
Sbjct: 212 LYYFFNLIVPCVLI 225
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 21.8 bits (44), Expect = 4.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 345 VYYYLNLIVSGVLI 304
+YY+ NLIV VLI
Sbjct: 212 LYYFFNLIVPCVLI 225
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 21.8 bits (44), Expect = 4.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 345 VYYYLNLIVSGVLI 304
+YY+ NLIV VLI
Sbjct: 212 LYYFFNLIVPCVLI 225
>AY884062-1|AAX84203.1| 712|Tribolium castaneum laccase 2B protein.
Length = 712
Score = 21.8 bits (44), Expect = 4.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 218 GISLSLQSAICNTPVFDAV 162
G+ L+ AICN P DAV
Sbjct: 450 GVVLNPLDAICNKPRKDAV 468
>EF125544-1|ABL73928.1| 279|Tribolium castaneum obstractor B
protein.
Length = 279
Score = 21.4 bits (43), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 199 CKLKEIPIDVFSLCDVLRN 255
CKL ++ DV CD +RN
Sbjct: 209 CKLGQVFDDVGKKCDWVRN 227
>AM292352-1|CAL23164.1| 250|Tribolium castaneum gustatory receptor
candidate 31 protein.
Length = 250
Score = 21.4 bits (43), Expect = 6.3
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = -1
Query: 483 YYYCLHKPVLNYLNSSNKLGVFVQSCLIYLKLQVFLSL*VIQVKLEVYYYL----NLIVS 316
+Y VL N S + V + L ++ +Q+F S+ +++ L+ YYL LI+
Sbjct: 148 HYRLYQLSVLIDNNMSYIIIVSFATNLYFIIIQLFGSMKIVKGTLKTAYYLISFALLIMR 207
Query: 315 GVLICL 298
+ +CL
Sbjct: 208 LISVCL 213
>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
Length = 2700
Score = 21.0 bits (42), Expect = 8.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -3
Query: 262 RSSFVAHHIN*IRRWEF 212
R++F+AH + I W F
Sbjct: 2419 RAAFIAHVLAFIEEWNF 2435
>AM292364-1|CAL23176.2| 353|Tribolium castaneum gustatory receptor
candidate 43 protein.
Length = 353
Score = 21.0 bits (42), Expect = 8.3
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = +3
Query: 327 NLDSNKLQALPESLINLKKLEVLNISNNFVQTLPVCL 437
N+D+ + + ++L L +L + NFV L + +
Sbjct: 236 NVDTIMYEKTNVTFVHLAVLNILRVGKNFVCLLSLII 272
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,513
Number of Sequences: 336
Number of extensions: 3270
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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