Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1064
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    57   2e-09
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    44   2e-05
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    43   4e-05
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    41   2e-04
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    40   3e-04
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    29   0.41 
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    28   0.95 
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    27   2.2  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   2.2  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    27   2.2  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    26   3.8  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   6.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.7  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    25   6.7  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.8  

>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 29/80 (36%), Positives = 48/80 (60%)
 Frame = +3

Query: 255 LDLSKNKLSVLPDDLSKLKHLKQLNLDSNKLQALPESLINLKKLEVLNISNNFVQTLPVC 434
           L++  N L   P+ L +L+ L+ L++  NK++ LPES   L  L+VL+IS N +  LP  
Sbjct: 80  LNIRSNVLREFPESLCRLESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPTY 139

Query: 435 LKNLNNLKQVYASNNNTAFP 494
           + ++ NL+ +   NN+  FP
Sbjct: 140 IAHMPNLEILKIENNHIVFP 159



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 29/76 (38%), Positives = 43/76 (56%)
 Frame = +3

Query: 252 KLDLSKNKLSVLPDDLSKLKHLKQLNLDSNKLQALPESLINLKKLEVLNISNNFVQTLPV 431
           +L L  N +  +  ++ K   L+ LN+ SN L+  PESL  L+ LE+L+IS N ++ LP 
Sbjct: 56  RLALGHNFIKSIGPEILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQLPE 115

Query: 432 CLKNLNNLKQVYASNN 479
               L NLK +  S N
Sbjct: 116 SFGALMNLKVLSISKN 131



 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 25/68 (36%), Positives = 41/68 (60%)
 Frame = +3

Query: 255 LDLSKNKLSVLPDDLSKLKHLKQLNLDSNKLQALPESLINLKKLEVLNISNNFVQTLPVC 434
           LD+S+NK+  LP+    L +LK L++  N+L  LP  + ++  LE+L I NN +   P  
Sbjct: 103 LDISRNKIKQLPESFGALMNLKVLSISKNRLFELPTYIAHMPNLEILKIENNHIVFPPPH 162

Query: 435 LKNLNNLK 458
           + N N+L+
Sbjct: 163 IAN-NDLQ 169



 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 508 IQSLDVLDLSHNKITEIPYGMSEL 579
           ++SL++LD+S NKI ++P     L
Sbjct: 97  LESLEILDISRNKIKQLPESFGAL 120


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 28/75 (37%), Positives = 44/75 (58%)
 Frame = +3

Query: 255 LDLSKNKLSVLPDDLSKLKHLKQLNLDSNKLQALPESLINLKKLEVLNISNNFVQTLPVC 434
           LD+S N+L  L   LS L HL++L +DSN L +L + + +L  L  L+  NN ++ L   
Sbjct: 673 LDISYNQLEDLTG-LSSLIHLRELKVDSNHLWSL-DGIQHLDGLLKLSACNNRIKELSFT 730

Query: 435 LKNLNNLKQVYASNN 479
             NL+ L+++   NN
Sbjct: 731 NSNLHRLEELLLGNN 745


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 18/57 (31%), Positives = 36/57 (63%)
 Frame = +3

Query: 255 LDLSKNKLSVLPDDLSKLKHLKQLNLDSNKLQALPESLINLKKLEVLNISNNFVQTL 425
           L  +  ++S +  +L KLKHL  L+L +N ++  PE +  +  L+V+N+S+N ++ +
Sbjct: 711 LSCTNCEMSYVSPNLGKLKHLVHLDLHANNIKIFPEEVWQVSSLKVVNLSSNILEKI 767



 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
 Frame = +3

Query: 255 LDLSKNKLSVL-PDDLSKLKH--LKQLNLDSNKLQALPESLINLKKLEVLNIS-NNFVQT 422
           L++S+N +  L P   S L    LK+LN+ +NKL  LP S   L  L  L++S NNFV T
Sbjct: 481 LNMSRNDIYELDPLIFSGLSRNSLKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNFV-T 539

Query: 423 LPVCLKNLNNLKQVYASNN 479
            P+ +  L+ L+ +  S+N
Sbjct: 540 FPLIITELSQLETLNFSHN 558



 Score = 38.3 bits (85), Expect = 9e-04
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
 Frame = +3

Query: 252 KLDLSKNKLSVLPDDLSKLKHLKQLNLDSN---KLQALPESLINLKKLEVLNISNNFVQT 422
           +LD+S N  S     ++ L+ L+ LN+  N   +L  L  S ++   L+ LNI+NN +  
Sbjct: 457 RLDISNNLRSPRGKPITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKLFF 516

Query: 423 LPVCLKNLNNLKQVYASNNN-TAFPKQILDTEL 518
           LP   + L NL  +  S NN   FP  ++ TEL
Sbjct: 517 LPHSTRYLVNLTYLDLSYNNFVTFP--LIITEL 547


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
 Frame = +3

Query: 255 LDLSKNKLSVLPDDLSKLKH-LKQLNLDSNKLQALPESLINLKKLEVLNISNNFVQTLPV 431
           L +  N+++   ++L+ L H L++L +  N L +    +  L+ LE+L++SNN ++ L  
Sbjct: 197 LSIQSNRITQF-ENLACLSHCLRELYVSHNGLTSF-SGIEVLENLEILDVSNNMIKHLSY 254

Query: 432 CLKNLNNLKQVYASNNNTAFPKQILD 509
            L  L NL +++ASNN  +  ++I D
Sbjct: 255 -LAGLKNLVELWASNNELSSFQEIED 279


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
 Frame = +3

Query: 255 LDLSKNKLSVLPDDLSKLKHLKQLNLDSNKLQALPESL-INLKKLEVLNISNNFVQTLPV 431
           LDLS N+L+ +P  L +L  L  LNL SNK+        I+L  L++L +S N + +L  
Sbjct: 361 LDLSGNELTEIPYALGELPQLCSLNLASNKITGCRTFYHISLSHLQILVLSRNHLTSLS- 419

Query: 432 CLKNLNNLKQVYASNNN 482
            L+N+ +L+++   +N+
Sbjct: 420 GLENVPSLEKLDIRDNS 436



 Score = 35.1 bits (77), Expect = 0.008
 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = +1

Query: 508 IQSLDVLDLSHNKITEIPYGMSEL-YVIELNLS 603
           +QSL  LDLS N++TEIPY + EL  +  LNL+
Sbjct: 355 LQSLVSLDLSGNELTEIPYALGELPQLCSLNLA 387


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 351 ALPESLINLKKLEVLNISNNFVQTLPV 431
           AL ESL +LKK E LN+S      LP+
Sbjct: 38  ALTESLKDLKKFETLNVSGKVPHVLPL 64


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 22/62 (35%), Positives = 27/62 (43%)
 Frame = -3

Query: 451 LFKFFKQTGSVCTKLFDIFKTSSFFKFMSDSGKA*SLLLSKFNCFRCFNLLKSSGKTESL 272
           LF     TG  C     I+ T   + F  +  +A + LL      RCF LL  SG T  L
Sbjct: 545 LFIIAGNTGFPCFFRTFIWTTYKLYPFSFEKKEAMAFLLDHPR--RCFTLLFPSGATWVL 602

Query: 271 FF 266
           FF
Sbjct: 603 FF 604


>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 169 MQFHNVVLNQRSPSWTLMFQD 107
           M F N +LN    SW L FQD
Sbjct: 1   MLFFNSILNDAPSSWALYFQD 21


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 155 CCFKPAFPILDPYVSRFRSQ 96
           C F   FP++ P++ RFRS+
Sbjct: 555 CGFNIYFPLMSPWIQRFRSR 574


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +3

Query: 357 PESLINLKKLEVLNISNNFVQTLPVCLKNLNNLKQVYASNNNTAFPKQILDTELRCFRS 533
           P S+ N+   EVLN+S   +Q + +CL  L     VY  +  +A+    LD+E R   S
Sbjct: 442 PLSIDNIIDQEVLNLSGGELQRVAICLA-LGMPADVYLIDEPSAY----LDSEQRIIAS 495


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 480 YYCLHKPVLNYLNSSNKLGVFVQSCLIYLK 391
           +  + KP L + + +N+LG+ V  C I  K
Sbjct: 346 FIAIVKPNLTFTDIANRLGISVSECFILAK 375


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 408 NFVQTLPVCLKNLNNLKQVYASNN 479
           N ++  P+ LKN NNL +  AS+N
Sbjct: 788 NALRQAPIGLKNTNNLSERNASSN 811


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 306  LKHLKQLNLDSNKLQALPESLINLKKLEVLNISNNFVQTL 425
            L+ L++ NLD+NK Q    SL+++KK   L  S     +L
Sbjct: 2576 LRQLQKFNLDANKFQF--TSLLDIKKWLNLGPSEKLFSSL 2613


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 29 PTENTPELTEFFFFCLLP 82
          P  N   L EFF FCL+P
Sbjct: 46 PKGNLGFLVEFFIFCLIP 63


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = -3

Query: 532 DLKHLSSVSSICFGKAVLLLLA*TC 458
           DLK LS+ S ICF  AVLLL +  C
Sbjct: 710 DLKPLST-SEICFLSAVLLLESLRC 733


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,143
Number of Sequences: 5004
Number of extensions: 53408
Number of successful extensions: 157
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)