Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1064
(621 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 35 6e-04
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 22 4.2
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 22 4.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.2
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 4.2
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 22 5.5
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 22 5.5
AB083010-1|BAC54131.1| 132|Apis mellifera fatty acid binding pr... 22 5.5
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 21 9.7
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 21 9.7
AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 21 9.7
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 35.1 bits (77), Expect = 6e-04
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +3
Query: 255 LDLSKNKLSVLPD-DLSKLKHLKQLNLDSNKLQALPE-SLINLKKLEVLNISNNFVQTLP 428
L L N++ L + +L HL++L L +N + + + + L+ LE+L +S N + T P
Sbjct: 847 LHLEDNRIRELKGFEFERLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRLSGNRLVTFP 906
Query: 429 VCLKNLN 449
V LN
Sbjct: 907 VWQVTLN 913
Score = 34.3 bits (75), Expect = 0.001
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 252 KLDLSKNKLSVLPDDLSKLKHLKQLNLDSNKLQALPE-SLINLKKLEVLNISNNFVQTLP 428
+LDLS N+L+ +PD L L LK L+L N++ S NL +L L + N + L
Sbjct: 435 ELDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLS 494
Query: 429 -VCLKNLNNLKQVYASNN 479
L +L NL+ + + N
Sbjct: 495 RGMLWDLPNLQILNLARN 512
Score = 32.7 bits (71), Expect = 0.003
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 276 LSVLPDDLSKLKHLKQLNLDSNKLQALP-ESLINLKKLEVLNISNN 410
L + PD L+ L L + + +QALP SL +L L+ LN++ N
Sbjct: 136 LELAPDSFLGLRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTEN 181
Score = 31.9 bits (69), Expect = 0.005
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 336 SNKLQALPESLINLKKLEVLNISNNFVQTLPV-CLKNLNNLKQVYASNN 479
S L+ P+S + L++L L I + VQ LPV L +L+NL+ + + N
Sbjct: 133 SRFLELAPDSFLGLRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTEN 181
Score = 24.6 bits (51), Expect = 0.79
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 255 LDLSKNKLS-VLPDDLSKLKHLKQLNLDSNKLQALPESLINLKKLEVLNISNNFVQ 419
L+L++NK+ V + L+ + LD N L + ++ L +LN+S N ++
Sbjct: 507 LNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDINGVFTSIASLLLLNLSENHIE 562
Score = 22.6 bits (46), Expect = 3.2
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = +1
Query: 496 NKYWIQSLDV--LDLSHNKITEI 558
N Y I+ V LD SHN+ITE+
Sbjct: 588 NYYKIRDSKVKTLDASHNRITEL 610
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 22.2 bits (45), Expect = 4.2
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 535 SHNKITEIPYGMSELYVIELNLSQMNT 615
SH+K+ EIP + Y I+ + +N+
Sbjct: 526 SHHKLIEIPEDLKYFYEIDNWMLDLNS 552
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 22.2 bits (45), Expect = 4.2
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 535 SHNKITEIPYGMSELYVIELNLSQMNT 615
SH+K+ EIP + Y I+ + +N+
Sbjct: 526 SHHKLIEIPEDLKYFYEIDNWMLDLNS 552
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 363 IQVKLE-VYYYLNLIVSGVLI 304
IQ++ +YY+ NLIV VLI
Sbjct: 188 IQIRRRTLYYFFNLIVPCVLI 208
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 363 IQVKLE-VYYYLNLIVSGVLI 304
IQ++ +YY+ NLIV VLI
Sbjct: 188 IQIRRRTLYYFFNLIVPCVLI 208
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 363 IQVKLE-VYYYLNLIVSGVLI 304
IQ++ +YY+ NLIV VLI
Sbjct: 188 IQIRRRTLYYFFNLIVPCVLI 208
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 363 IQVKLE-VYYYLNLIVSGVLI 304
IQ++ +YY+ NLIV VLI
Sbjct: 188 IQIRRRTLYYFFNLIVPCVLI 208
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 363 IQVKLE-VYYYLNLIVSGVLI 304
IQ++ +YY+ NLIV VLI
Sbjct: 188 IQIRRRTLYYFFNLIVPCVLI 208
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 363 IQVKLE-VYYYLNLIVSGVLI 304
IQ++ +YY+ NLIV VLI
Sbjct: 188 IQIRRRTLYYFFNLIVPCVLI 208
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 363 IQVKLE-VYYYLNLIVSGVLI 304
IQ++ +YY+ NLIV VLI
Sbjct: 256 IQIRRRTLYYFFNLIVPCVLI 276
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 363 IQVKLE-VYYYLNLIVSGVLI 304
IQ++ +YY+ NLIV VLI
Sbjct: 256 IQIRRRTLYYFFNLIVPCVLI 276
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 366 VIQVKLEVYYYLNLIVSGVLI 304
VI + +YY+ NLIV VLI
Sbjct: 225 VIIRRRTLYYFFNLIVPCVLI 245
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 21.8 bits (44), Expect = 5.5
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Frame = -1
Query: 483 YYYCLHKPVLN--YLNS-SNKLG 424
+Y+ LHK VLN YL SN +G
Sbjct: 257 FYFFLHKQVLNRYYLERLSNDMG 279
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 21.8 bits (44), Expect = 5.5
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Frame = -1
Query: 483 YYYCLHKPVLN--YLNS-SNKLG 424
+Y+ LHK VLN YL SN +G
Sbjct: 257 FYFFLHKQVLNRYYLERLSNDMG 279
>AB083010-1|BAC54131.1| 132|Apis mellifera fatty acid binding
protein protein.
Length = 132
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +3
Query: 429 VCLKNLNNLKQVYASNNNTAFPKQILDTELRCFRSV 536
VC + N L QV T ++ TE++ V
Sbjct: 84 VCTLDGNKLIQVQKGEKQTTIEREFSSTEMKAIMKV 119
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.0 bits (42), Expect = 9.7
Identities = 7/30 (23%), Positives = 17/30 (56%)
Frame = -2
Query: 578 NSDIPYGISVILLCDRSKTSKLCIQYLFRK 489
N+ + G+ +ILLC++ + +++ K
Sbjct: 232 NASVAGGMEMILLCEKVAKEDIQVRFFEEK 261
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 21.0 bits (42), Expect = 9.7
Identities = 7/30 (23%), Positives = 17/30 (56%)
Frame = -2
Query: 578 NSDIPYGISVILLCDRSKTSKLCIQYLFRK 489
N+ + G+ +ILLC++ + +++ K
Sbjct: 232 NASVAGGMEMILLCEKVAKEDIQVRFFEEK 261
>AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase
protein.
Length = 588
Score = 21.0 bits (42), Expect = 9.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +3
Query: 135 ERWFKTTL*NCIENWCIAN 191
+ W K T N + NW + N
Sbjct: 341 DNWIKGTPQNNVPNWVMGN 359
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,242
Number of Sequences: 438
Number of extensions: 3600
Number of successful extensions: 24
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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