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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1063
         (645 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ...   101   2e-20
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;...   100   3e-20
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ...    99   5e-20
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ...    99   5e-20
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498...    99   5e-20
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;...   100   6e-20
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI...    97   3e-19
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ...    95   1e-18
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol...    92   1e-17
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na...    91   2e-17
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri...    91   2e-17
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp...    91   2e-17
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or...    91   3e-17
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ...    91   3e-17
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F...    90   4e-17
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|...    90   5e-17
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B...    89   8e-17
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P...    89   1e-16
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec...    88   1e-16
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ...    88   1e-16
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob...    86   8e-16
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co...    84   3e-15
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ...    83   4e-15
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|...    80   5e-14
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|...    80   5e-14
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th...    79   7e-14
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N...    79   9e-14
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ...    79   1e-13
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu...    78   2e-13
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ...    77   5e-13
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ...    75   2e-12
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di...    74   3e-12
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ...    74   3e-12
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu...    73   5e-12
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En...    71   2e-11
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9....    71   3e-11
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|...    70   4e-11
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O...    69   7e-11
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c...    69   1e-10
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4...    69   1e-10
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B...    68   2e-10
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|...    68   2e-10
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa...    68   2e-10
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl...    67   4e-10
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI...    66   5e-10
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI...    66   5e-10
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI...    66   5e-10
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub...    66   7e-10
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na...    65   2e-09
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9....    64   2e-09
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M...    64   3e-09
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol...    64   3e-09
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni...    64   3e-09
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A...    64   3e-09
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=...    63   5e-09
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte...    63   6e-09
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq...    62   1e-08
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri...    62   1e-08
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P...    62   1e-08
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri...    61   3e-08
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B...    60   3e-08
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte...    60   4e-08
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac...    60   4e-08
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro...    59   8e-08
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ...    59   1e-07
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil...    59   1e-07
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=...    59   1e-07
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym...    59   1e-07
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre...    59   1e-07
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid...    58   1e-07
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh...    58   2e-07
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ...    58   2e-07
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;...    58   2e-07
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob...    56   6e-07
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti...    56   6e-07
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ...    56   6e-07
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ...    55   1e-06
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype...    55   1e-06
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl...    55   2e-06
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R...    55   2e-06
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R...    55   2e-06
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium...    54   3e-06
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3....    53   5e-06
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit...    53   7e-06
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=...    53   7e-06
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ...    53   7e-06
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver...    52   9e-06
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter...    51   3e-05
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl...    50   4e-05
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My...    50   4e-05
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D...    50   6e-05
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae...    48   2e-04
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ...    47   3e-04
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap...    46   6e-04
UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di...    44   0.003
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha...    43   0.006
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te...    42   0.010
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;...    42   0.013
UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1; Ha...    41   0.029
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox...    36   0.63 
UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4; C...    34   3.4  
UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2; Br...    34   3.4  
UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1; Aq...    33   4.5  

>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
           root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 516

 Score =  101 bits (241), Expect = 2e-20
 Identities = 43/48 (89%), Positives = 46/48 (95%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           ++ DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIISH
Sbjct: 209 LLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISH 256



 Score = 75.4 bits (177), Expect = 1e-12
 Identities = 39/82 (47%), Positives = 46/82 (56%)
 Frame = +2

Query: 8   PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 187
           PG+L+GDDQIYN IVTAHA                 N LVPL++GAPD+AFPR+NN+ F 
Sbjct: 44  PGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPDMAFPRMNNMSFW 103

Query: 188 XXXXXXXXXXXXXIVENGAGTG 253
                         VE GAGTG
Sbjct: 104 LLPPSFLLLLASSGVEAGAGTG 125



 Score = 62.1 bits (144), Expect = 1e-08
 Identities = 34/66 (51%), Positives = 38/66 (57%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPL+ N+AH G SVDL IFSLHLAG+SS                   S  Q PLFV 
Sbjct: 127 TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVW 186

Query: 436 AVGITA 453
           AV +TA
Sbjct: 187 AVLVTA 192


>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
           Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
           melitaearum (Parasitoid wasp)
          Length = 499

 Score =  100 bits (239), Expect = 3e-20
 Identities = 42/48 (87%), Positives = 46/48 (95%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           ++ DRN+NTSFFDP+GGGDPILYQHLF FFGHPEVYILILPGFGIISH
Sbjct: 193 LLTDRNMNTSFFDPSGGGDPILYQHLFWFFGHPEVYILILPGFGIISH 240



 Score = 72.9 bits (171), Expect = 6e-12
 Identities = 38/94 (40%), Positives = 49/94 (52%)
 Frame = +2

Query: 2   GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181
           G PGSLIG+DQIYN+IVT+HA                 N L+PL+LG+PD++FPR+NN+ 
Sbjct: 26  GMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFPRMNNMS 85

Query: 182 FXXXXXXXXXXXXXXIVENGAGTG*QFTPHFHLI 283
           F               +  G GTG    P   LI
Sbjct: 86  FWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLI 119



 Score = 52.4 bits (120), Expect = 9e-06
 Identities = 30/66 (45%), Positives = 35/66 (53%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPLS  + H G SVDL IFSLHLAG SS                   + D++ LF  
Sbjct: 111 TVYPPLSLILGHGGMSVDLGIFSLHLAGASSIMGAVNFITTILNMRSNLFNMDKMSLFSW 170

Query: 436 AVGITA 453
           +V ITA
Sbjct: 171 SVFITA 176


>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
           rubiginosus
          Length = 504

 Score =   99 bits (238), Expect = 5e-20
 Identities = 42/48 (87%), Positives = 46/48 (95%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           ++ DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISH
Sbjct: 210 LLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISH 257



 Score = 79.0 bits (186), Expect = 9e-14
 Identities = 41/84 (48%), Positives = 48/84 (57%)
 Frame = +2

Query: 2   GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181
           G PG+L+GDDQIYN IVTAHA                 N LVPL++GAPD+AFPR+NN+ 
Sbjct: 43  GQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMS 102

Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253
           F               VE GAGTG
Sbjct: 103 FWLXPPSFLLLLASSTVEAGAGTG 126



 Score = 63.3 bits (147), Expect = 5e-09
 Identities = 36/66 (54%), Positives = 39/66 (59%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPL+ N+AH G SVDLAIFSLHLAGISS                   S  Q PLFV 
Sbjct: 128 TVYPPLAGNLAHAGASVDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLFVW 187

Query: 436 AVGITA 453
           +V ITA
Sbjct: 188 SVLITA 193


>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
           Eukaryota|Rep: Cytochrome c oxidase subunit I -
           Ophisurus macrorhynchos
          Length = 546

 Score =   99 bits (238), Expect = 5e-20
 Identities = 42/48 (87%), Positives = 46/48 (95%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           ++ DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISH
Sbjct: 209 LLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISH 256



 Score = 75.4 bits (177), Expect = 1e-12
 Identities = 39/82 (47%), Positives = 46/82 (56%)
 Frame = +2

Query: 8   PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 187
           PG+L+GDDQIYN IVTAHA                 N LVPL++GAPD+AFPR+NN+ F 
Sbjct: 44  PGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFW 103

Query: 188 XXXXXXXXXXXXXIVENGAGTG 253
                         VE GAGTG
Sbjct: 104 LLPPSFLLLLASSGVEAGAGTG 125



 Score = 59.7 bits (138), Expect = 6e-08
 Identities = 32/66 (48%), Positives = 38/66 (57%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPL+ N+AH G SVDL IFSLHLAG+SS                   +  Q PLFV 
Sbjct: 127 TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVW 186

Query: 436 AVGITA 453
           +V +TA
Sbjct: 187 SVLVTA 192


>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
           root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
           (Human)
          Length = 513

 Score =   99 bits (238), Expect = 5e-20
 Identities = 42/48 (87%), Positives = 46/48 (95%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           ++ DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISH
Sbjct: 209 LLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISH 256



 Score = 75.8 bits (178), Expect = 8e-13
 Identities = 38/84 (45%), Positives = 47/84 (55%)
 Frame = +2

Query: 2   GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181
           G PG+L+G+D IYN IVTAHA                 N LVPL++GAPD+AFPR+NN+ 
Sbjct: 42  GQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMS 101

Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253
           F              +VE GAGTG
Sbjct: 102 FWLLPPSLLLLLASAMVEAGAGTG 125



 Score = 57.2 bits (132), Expect = 3e-07
 Identities = 32/66 (48%), Positives = 37/66 (56%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPL+ N +H G SVDL IFSLHLAG+SS                   +  Q PLFV 
Sbjct: 127 TVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVW 186

Query: 436 AVGITA 453
           +V ITA
Sbjct: 187 SVLITA 192


>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
           cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 527

 Score = 99.5 bits (237), Expect = 6e-20
 Identities = 42/48 (87%), Positives = 45/48 (93%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           ++ DRN NT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIISH
Sbjct: 212 LLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISH 259



 Score = 61.7 bits (143), Expect = 1e-08
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
 Frame = +2

Query: 8   PGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181
           PG  I  G+ Q+YN ++TAHA                 N  VP+++GAPD+AFPR+NNI 
Sbjct: 45  PGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDMAFPRLNNIS 104

Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253
           F              +VE G+GTG
Sbjct: 105 FWLLPPSLLLLLSSALVEVGSGTG 128



 Score = 58.4 bits (135), Expect = 1e-07
 Identities = 31/67 (46%), Positives = 39/67 (58%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPLS   +H G +VDLAIFSLHL+G+SS                   +  +LPLFV 
Sbjct: 130 TVYPPLSGITSHSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVW 189

Query: 436 AVGITAF 456
           +V +TAF
Sbjct: 190 SVLVTAF 196


>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI8 (EC
           3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
           endonuclease aI8 precursor [Contains: Truncated
           non-functional cytochrome oxidase 1; Intron-encoded
           endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
           fungus)
          Length = 645

 Score = 97.1 bits (231), Expect = 3e-19
 Identities = 39/48 (81%), Positives = 45/48 (93%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           ++ DRN NTSF+DPAGGGDPILYQHLF FFGHPEVYILI+PGFG++SH
Sbjct: 209 LLTDRNFNTSFYDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGMVSH 256



 Score = 66.5 bits (155), Expect = 5e-10
 Identities = 34/79 (43%), Positives = 41/79 (51%)
 Frame = +2

Query: 17  LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 196
           L GD Q+YN I+TAHA                 N LVP+++GAPD+AFPR+NNI F    
Sbjct: 47  LNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLP 106

Query: 197 XXXXXXXXXXIVENGAGTG 253
                      VE GAGTG
Sbjct: 107 PSLILLLASAFVEQGAGTG 125



 Score = 58.0 bits (134), Expect = 2e-07
 Identities = 32/66 (48%), Positives = 38/66 (57%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPLS   +H G SVDLAIFSLHL+GISS                   +  +LPLFV 
Sbjct: 127 TVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVW 186

Query: 436 AVGITA 453
           A+ +TA
Sbjct: 187 AIFVTA 192


>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
           cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
           Chondrus crispus (Carragheen)
          Length = 532

 Score = 95.1 bits (226), Expect = 1e-18
 Identities = 40/48 (83%), Positives = 44/48 (91%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           ++ DRN NTSFFD +GGGDPILYQHLF FFGHPEVYILILPGFG+ISH
Sbjct: 217 LLTDRNFNTSFFDASGGGDPILYQHLFWFFGHPEVYILILPGFGMISH 264



 Score = 63.7 bits (148), Expect = 4e-09
 Identities = 31/79 (39%), Positives = 42/79 (53%)
 Frame = +2

Query: 17  LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 196
           L+G+ QIYN ++TAHA                 N LVP+++G+PD+AFPR+NNI F    
Sbjct: 55  LLGNHQIYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAFPRLNNISFWLLP 114

Query: 197 XXXXXXXXXXIVENGAGTG 253
                     +VE G GTG
Sbjct: 115 PSLCLLLMSALVEVGVGTG 133



 Score = 56.0 bits (129), Expect = 7e-07
 Identities = 30/67 (44%), Positives = 39/67 (58%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPLSS  +H G +VDLAIFSLH++G SS                   S  ++PLFV 
Sbjct: 135 TVYPPLSSIQSHSGGAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLFVW 194

Query: 436 AVGITAF 456
           ++ +TAF
Sbjct: 195 SILVTAF 201


>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
           polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
           Cytochrome oxidase subunits 1 and 2 polyprotein -
           Phaeosphaeria nodorum SN15
          Length = 789

 Score = 91.9 bits (218), Expect = 1e-17
 Identities = 39/47 (82%), Positives = 43/47 (91%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           ++ DRN NTSFF+ AGGGDPILYQHLF FFGHPEVYILI+PGFGIIS
Sbjct: 210 VLTDRNFNTSFFEVAGGGDPILYQHLFWFFGHPEVYILIIPGFGIIS 256



 Score = 60.1 bits (139), Expect = 4e-08
 Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +2

Query: 8   PG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184
           PG   I D+Q+YN+I+TAHA                 N L+PL LG PD+ FPR+NNI +
Sbjct: 44  PGVQYIADNQLYNSIITAHAIIMIFFMVMPALIGGFGNFLLPLGLGGPDMGFPRLNNISY 103

Query: 185 XXXXXXXXXXXXXXIVENGAGTG 253
                          +ENG GTG
Sbjct: 104 LLLIPSIVLFLFAGGIENGVGTG 126



 Score = 49.6 bits (113), Expect = 6e-05
 Identities = 30/66 (45%), Positives = 34/66 (51%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           T+YPPLS   +H G SVDLAIF LHL+GISS                      +L LF  
Sbjct: 128 TLYPPLSGIQSHSGPSVDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAW 187

Query: 436 AVGITA 453
           AV ITA
Sbjct: 188 AVVITA 193


>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
           Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
           Naegleria gruberi
          Length = 633

 Score = 91.5 bits (217), Expect = 2e-17
 Identities = 37/48 (77%), Positives = 43/48 (89%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           ++ DRN NTSF+DP GGGD +LYQHLF FFGHPEVYILILPGFG++SH
Sbjct: 213 LLFDRNFNTSFYDPVGGGDVVLYQHLFWFFGHPEVYILILPGFGLVSH 260



 Score = 53.2 bits (122), Expect = 5e-06
 Identities = 30/67 (44%), Positives = 34/67 (50%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPLSS  +H G SVDL IFS HL GI S                       LPLFV 
Sbjct: 131 TVYPPLSSLQSHSGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLFVW 190

Query: 436 AVGITAF 456
           +V +T+F
Sbjct: 191 SVAVTSF 197



 Score = 51.6 bits (118), Expect = 2e-05
 Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
 Frame = +2

Query: 17  LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 196
           L G+   YN I T H                  N  VP+++GAPD++FPR+NN  F    
Sbjct: 51  LFGEYHFYNMITTVHGVLMLFVVVMPILFGGFGNYFVPILIGAPDMSFPRLNNFSFWLLP 110

Query: 197 XXXXXXXXXXIVENGAGTG*Q-FTPHFHLISHIEEDP*ILLF-FHYI 331
                       E G GTG   + P   L SH      +++F FH +
Sbjct: 111 GAILLAVLATYSEGGPGTGWTVYPPLSSLQSHSGASVDLMIFSFHLV 157


>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
           Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
           subunit I - Periclimenes thermohydrophilus
          Length = 217

 Score = 91.5 bits (217), Expect = 2e-17
 Identities = 48/89 (53%), Positives = 58/89 (65%)
 Frame = -1

Query: 267 GVNCYPVPAPFSTILLEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXX 88
           G   +PVP P STI L  + ++EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP     
Sbjct: 105 GYTVHPVPTPLSTIPLNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGM 164

Query: 87  XXXXXXXKACAVTIVL*I*SSPINDPGFP 1
                  KA AVT+ L I S PI  PG P
Sbjct: 165 TMKKIITKAWAVTMTL-IWSFPIKLPGCP 192



 Score = 46.4 bits (105), Expect = 6e-04
 Identities = 31/68 (45%), Positives = 34/68 (50%)
 Frame = -2

Query: 458 KNAVIPTAHTNKGN*SNDILFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAIL 279
           K AV  T  TN G  S  I  +R             I+E PAKC+EKI  STD P CAI 
Sbjct: 41  KMAVSNTDQTNSGMRSMVIPADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIP 100

Query: 278 DESGG*TV 255
             SGG TV
Sbjct: 101 LASGGYTV 108



 Score = 43.6 bits (98), Expect = 0.004
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = -1

Query: 579 NKC*YKIGSPPPAGSKNDVFKFRSL 505
           NKC + IGSPPPAGSK +VFKFRS+
Sbjct: 1   NKC-WSIGSPPPAGSKKEVFKFRSV 24


>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
           precursor (DNA endonuclease I-SceIV) [Contains:
           Truncated non-functional cytochrome oxidase 1; DNA
           endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
           endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
           Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
           endonuclease I-SceIV) [Contains: Truncated
           non-functional cytochrome oxidase 1; DNA endonuclease
           aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
           SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
          Length = 630

 Score = 91.1 bits (216), Expect = 2e-17
 Identities = 38/48 (79%), Positives = 44/48 (91%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           ++ DRN NTSFF+ +GGGDPILY+HLF FFGHPEVYILI+PGFGIISH
Sbjct: 210 LLLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILIIPGFGIISH 257



 Score = 58.8 bits (136), Expect = 1e-07
 Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
 Frame = +2

Query: 8   PGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181
           PGS  L G+ Q++N +V  HA                 N L+PL++GA D AFPRINNI 
Sbjct: 43  PGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIA 102

Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253
           F              +VE+GAGTG
Sbjct: 103 FWVLPMGLVCLVTSTLVESGAGTG 126



 Score = 58.4 bits (135), Expect = 1e-07
 Identities = 33/67 (49%), Positives = 38/67 (56%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPLSS  AH G SVDLAIF+LHL  ISS                   +  +LPLFV 
Sbjct: 128 TVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVW 187

Query: 436 AVGITAF 456
           ++ ITAF
Sbjct: 188 SIFITAF 194


>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
           organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
           (strain CCS1)
          Length = 628

 Score = 90.6 bits (215), Expect = 3e-17
 Identities = 36/48 (75%), Positives = 43/48 (89%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           ++ DRN  T+FFDPAGGGDPIL+QH+F FFGHPEVYI+ILP FG+ISH
Sbjct: 315 LLTDRNFGTTFFDPAGGGDPILFQHIFWFFGHPEVYIVILPAFGVISH 362



 Score = 50.8 bits (116), Expect = 3e-05
 Identities = 23/81 (28%), Positives = 37/81 (45%)
 Frame = +2

Query: 26  DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXX 205
           D  ++N ++T H                  N  +PL++GAPD+AFPR+NN+ +       
Sbjct: 156 DGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFPRLNNLSYWMYVAGT 215

Query: 206 XXXXXXXIVENGAGTG*QFTP 268
                  +++ GAG G  F P
Sbjct: 216 CLAFCSVMIDGGAGPGWTFYP 236



 Score = 41.5 bits (93), Expect = 0.017
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           T YPP+S+      R+VD AIF++H++G SS                   +  ++PLF  
Sbjct: 233 TFYPPISAQGVETSRAVDFAIFAVHVSGASSILGSINFITTFLNMRAPGMTLHKVPLFAW 292

Query: 436 AVGITAF 456
           +V +TA+
Sbjct: 293 SVFVTAW 299


>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
           Bilateria|Rep: Cytochrome c oxidase subunit I -
           Schistosoma mansoni (Blood fluke)
          Length = 609

 Score = 90.6 bits (215), Expect = 3e-17
 Identities = 36/48 (75%), Positives = 44/48 (91%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           ++ DRN  T+FF+P+GGGDPIL+QHLF FFGHPEVY+LILPGFGI+SH
Sbjct: 299 LLFDRNFGTAFFEPSGGGDPILFQHLFWFFGHPEVYVLILPGFGIVSH 346



 Score = 33.9 bits (74), Expect = 3.4
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 348
           T+YPPLS      G  VD  +FSLHLAG+SS
Sbjct: 223 TLYPPLSI-WEGSGFGVDYLMFSLHLAGVSS 252


>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
           Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
           - Trichoderma reesei (Hypocrea jecorina)
          Length = 635

 Score = 90.2 bits (214), Expect = 4e-17
 Identities = 38/47 (80%), Positives = 43/47 (91%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           ++ DRN NTSFF+ AGGGDPIL+QHLF FFGHPEVYILI+PGFGIIS
Sbjct: 235 VLTDRNFNTSFFEVAGGGDPILFQHLFWFFGHPEVYILIIPGFGIIS 281



 Score = 63.3 bits (147), Expect = 5e-09
 Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = +2

Query: 8   PG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184
           PG   I ++Q+YN+I+TAHA                 N L+PL++G PD+AFPR+NNI F
Sbjct: 72  PGVQFIANNQLYNSIITAHAILMIFFMVMPALIGGFGNFLMPLMIGGPDMAFPRLNNISF 131

Query: 185 XXXXXXXXXXXXXXIVENGAGTG 253
                         I+E G GTG
Sbjct: 132 WLLPPSLLLLVFSAIIEGGVGTG 154



 Score = 45.2 bits (102), Expect = 0.001
 Identities = 20/29 (68%), Positives = 24/29 (82%)
 Frame = +1

Query: 262 YPPLSSNIAHRGRSVDLAIFSLHLAGISS 348
           YPPLS   +H G SVDLAIF+LHL+G+SS
Sbjct: 162 YPPLSGLQSHSGPSVDLAIFALHLSGVSS 190


>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
           group|Rep: Endonuclease - Saccharomyces servazzii
           (Yeast)
          Length = 675

 Score = 89.8 bits (213), Expect = 5e-17
 Identities = 37/48 (77%), Positives = 42/48 (87%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           ++ DRN NTSFF+ AGGGDPI YQH F FFGHPEVYILI+PGFGI+SH
Sbjct: 210 LLMDRNFNTSFFEVAGGGDPIFYQHAFWFFGHPEVYILIIPGFGIVSH 257



 Score = 61.3 bits (142), Expect = 2e-08
 Identities = 35/67 (52%), Positives = 38/67 (56%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPLSS  AH G SVDLAIFSLHL  ISS                   S  ++PLFV 
Sbjct: 128 TVYPPLSSIQAHSGPSVDLAIFSLHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLFVW 187

Query: 436 AVGITAF 456
           A+ ITAF
Sbjct: 188 AIFITAF 194



 Score = 55.2 bits (127), Expect = 1e-06
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
 Frame = +2

Query: 8   PGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181
           PGS  L G+ Q++N +V  HA                 N ++PL++GA D++FPRIN+I 
Sbjct: 43  PGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGGFGNYMLPLMIGATDMSFPRINSIG 102

Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253
           F              +VE+GAGTG
Sbjct: 103 FWLLPMGLVCLVTSTLVESGAGTG 126


>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
           Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
           cynthia ricini (Indian eri silkmoth)
          Length = 510

 Score = 89.0 bits (211), Expect = 8e-17
 Identities = 46/84 (54%), Positives = 50/84 (59%)
 Frame = +2

Query: 2   GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181
           G PGSLIGDDQIYNTIVTAHA                 N LVPL+LGAPD+AFPR+NN+ 
Sbjct: 39  GTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMS 98

Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253
           F              IVENGAGTG
Sbjct: 99  FWLLPPSLTLLISSSIVENGAGTG 122



 Score = 82.6 bits (195), Expect = 7e-15
 Identities = 44/67 (65%), Positives = 45/67 (67%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPLSSNIAH G SVDLAIFSLHLAGISS                   SFDQ+PLFV 
Sbjct: 124 TVYPPLSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPLFVW 183

Query: 436 AVGITAF 456
           AVGITAF
Sbjct: 184 AVGITAF 190



 Score = 72.1 bits (169), Expect = 1e-11
 Identities = 29/35 (82%), Positives = 33/35 (94%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 604
           ++ DRNLNTSFFDPAGGGDPILYQHLF FFGHP++
Sbjct: 206 LLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPKL 240


>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
           Panarthropoda|Rep: Cytochrome c oxidase subunit I -
           Pagyris cymothoe
          Length = 487

 Score = 88.6 bits (210), Expect = 1e-16
 Identities = 45/84 (53%), Positives = 50/84 (59%)
 Frame = +2

Query: 2   GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181
           G PGSLIGDDQIYNTIVTAHA                 N L+PL+LGAPD+AFPR+NN+ 
Sbjct: 15  GTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRMNNMS 74

Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253
           F              IVENGAGTG
Sbjct: 75  FWLLPPSLILLISSSIVENGAGTG 98



 Score = 82.6 bits (195), Expect = 7e-15
 Identities = 35/39 (89%), Positives = 37/39 (94%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 616
           ++ DRNLNTSFFDPAGGGDPILYQHLF FFGHPEVYILI
Sbjct: 182 LLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI 220



 Score = 79.8 bits (188), Expect = 5e-14
 Identities = 42/66 (63%), Positives = 44/66 (66%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPLSSNIAH G SVDLAIFSLHLAGISS                   SFDQ+PLF+ 
Sbjct: 100 TVYPPLSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRINKMSFDQMPLFIW 159

Query: 436 AVGITA 453
           AVGITA
Sbjct: 160 AVGITA 165


>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
           Echinoida|Rep: Cytochrome c oxidase subunit I -
           Echinometra oblonga
          Length = 386

 Score = 88.2 bits (209), Expect = 1e-16
 Identities = 39/54 (72%), Positives = 42/54 (77%)
 Frame = +2

Query: 482 SWSYYNIINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           SW   N     N  T+FFDPAGGGD IL+QHLF FFGHPEVYILILPGFG+ISH
Sbjct: 180 SWGNNNASYSSNYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPGFGMISH 233


>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
           Eukaryota|Rep: Cytochrome c oxidase subunit I -
           Paracoccidioides brasiliensis
          Length = 710

 Score = 88.2 bits (209), Expect = 1e-16
 Identities = 38/47 (80%), Positives = 43/47 (91%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           ++ DRNLNTSF++ AGGGD ILYQHLF FFGHPEVYILI+PGFGIIS
Sbjct: 236 LLTDRNLNTSFYELAGGGDAILYQHLFWFFGHPEVYILIIPGFGIIS 282



 Score = 61.7 bits (143), Expect = 1e-08
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = +2

Query: 8   PG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184
           PG   I D+Q+YN+I+T+H                  N L+P+++G PD+AFPR+NN+ +
Sbjct: 70  PGIQYIEDNQLYNSIITSHGVIMIFFMVMPALIGGFGNFLLPILIGGPDMAFPRLNNVSY 129

Query: 185 XXXXXXXXXXXXXXIVENGAGTG 253
                         I+ENG GTG
Sbjct: 130 WLLIPSLFLFVFAAIIENGVGTG 152



 Score = 44.4 bits (100), Expect = 0.002
 Identities = 27/66 (40%), Positives = 31/66 (46%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           T+YPPLS   +H    VDL IF LHL+GISS                      +L LF  
Sbjct: 154 TLYPPLSGIQSHSSMGVDLGIFGLHLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGW 213

Query: 436 AVGITA 453
           AV ITA
Sbjct: 214 AVVITA 219


>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
           Alphaproteobacteria|Rep: Cytochrome-c oxidase -
           Sphingomonas sp. SKA58
          Length = 556

 Score = 85.8 bits (203), Expect = 8e-16
 Identities = 36/47 (76%), Positives = 41/47 (87%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           ++ DRN  T+F+D AGGGDP LYQHLF FFGHPEVYI+ILPGFGIIS
Sbjct: 252 LLTDRNFGTTFYDAAGGGDPELYQHLFWFFGHPEVYIMILPGFGIIS 298



 Score = 47.6 bits (108), Expect = 3e-04
 Identities = 23/73 (31%), Positives = 32/73 (43%)
 Frame = +2

Query: 35  IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 214
           ++N ++TAH                  N  VP+++GAPD+AFPR+NNI F          
Sbjct: 93  LWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALL 152

Query: 215 XXXXIVENGAGTG 253
                V  G G G
Sbjct: 153 LGSTFVPGGTGNG 165



 Score = 44.0 bits (99), Expect = 0.003
 Identities = 26/67 (38%), Positives = 36/67 (53%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVY PLS++    G +VD+AI SLH+AG SS                   +  ++PLFV 
Sbjct: 171 TVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTILNMRAPGMTLHKMPLFVW 229

Query: 436 AVGITAF 456
           +V +TAF
Sbjct: 230 SVLVTAF 236


>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
           unguis
          Length = 573

 Score = 83.8 bits (198), Expect = 3e-15
 Identities = 35/48 (72%), Positives = 42/48 (87%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           ++ DR+ +TSF+ P GGGDPIL+QHLF FFGHPEVYILILP FG+ISH
Sbjct: 212 LLLDRHFSTSFYYPEGGGDPILWQHLFWFFGHPEVYILILPAFGVISH 259



 Score = 41.9 bits (94), Expect = 0.013
 Identities = 18/31 (58%), Positives = 25/31 (80%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 348
           T+YPPLS++    G  +DLA+FSLH+AG+SS
Sbjct: 129 TMYPPLSNSEFMDGLPIDLAVFSLHMAGMSS 159



 Score = 33.5 bits (73), Expect = 4.5
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +2

Query: 5   NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNI 178
           +PG  +    +Y++I+T HA                 N  +PL++   D++ PR+NN+
Sbjct: 45  HPGEWLQVGYMYHSIMTMHAFMMIFFFVMPTSIGGLGNWFIPLMIKIKDLSMPRLNNL 102


>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
           Alveolata|Rep: Cytochrome c oxidase subunit 1 -
           Plasmodium falciparum
          Length = 476

 Score = 83.4 bits (197), Expect = 4e-15
 Identities = 35/48 (72%), Positives = 40/48 (83%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           +++D + NT FFDP   GDPILYQHLF FFGHPEVYILILP FG+ISH
Sbjct: 215 LLSDLHFNTLFFDPTFAGDPILYQHLFWFFGHPEVYILILPAFGVISH 262



 Score = 38.7 bits (86), Expect = 0.12
 Identities = 20/73 (27%), Positives = 29/73 (39%)
 Frame = +2

Query: 35  IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 214
           +YN I T H                  N  +P++ G+P++A+PRIN+I            
Sbjct: 58  LYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLV 117

Query: 215 XXXXIVENGAGTG 253
                 E G GTG
Sbjct: 118 ILSTAAEFGGGTG 130


>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
           stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
          Length = 763

 Score = 79.8 bits (188), Expect = 5e-14
 Identities = 32/47 (68%), Positives = 41/47 (87%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           ++ DRN NTSFF  +GGGDP+LY+H+F FFGHPEVYILI+P FG++S
Sbjct: 227 LLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVPVFGVVS 273



 Score = 54.8 bits (126), Expect = 2e-06
 Identities = 28/66 (42%), Positives = 39/66 (59%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           T+YPPL+S  +H G S+D+AIF+LHL+G+SS                    + +LPLFV 
Sbjct: 145 TLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVW 204

Query: 436 AVGITA 453
           +V ITA
Sbjct: 205 SVLITA 210



 Score = 53.2 bits (122), Expect = 5e-06
 Identities = 27/83 (32%), Positives = 40/83 (48%)
 Frame = +2

Query: 5   NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184
           NP  L+ + Q++N ++TAHA                 N LVPL +G+ D AFPRINN+ F
Sbjct: 61  NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120

Query: 185 XXXXXXXXXXXXXXIVENGAGTG 253
                         +++ G G+G
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSG 143


>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
           stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
          Length = 676

 Score = 79.8 bits (188), Expect = 5e-14
 Identities = 32/47 (68%), Positives = 41/47 (87%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           ++ DRN NTSFF  +GGGDP+LY+H+F FFGHPEVYILI+P FG++S
Sbjct: 227 LLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVPVFGVVS 273



 Score = 54.8 bits (126), Expect = 2e-06
 Identities = 28/66 (42%), Positives = 39/66 (59%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           T+YPPL+S  +H G S+D+AIF+LHL+G+SS                    + +LPLFV 
Sbjct: 145 TLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVW 204

Query: 436 AVGITA 453
           +V ITA
Sbjct: 205 SVLITA 210



 Score = 53.2 bits (122), Expect = 5e-06
 Identities = 27/83 (32%), Positives = 40/83 (48%)
 Frame = +2

Query: 5   NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184
           NP  L+ + Q++N ++TAHA                 N LVPL +G+ D AFPRINN+ F
Sbjct: 61  NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120

Query: 185 XXXXXXXXXXXXXXIVENGAGTG 253
                         +++ G G+G
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSG 143


>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
           Theileria|Rep: Cytochrome c oxidase subunit 1 -
           Theileria parva
          Length = 481

 Score = 79.4 bits (187), Expect = 7e-14
 Identities = 33/44 (75%), Positives = 38/44 (86%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           DR+ NT FF+ +  GDP+LYQHLF FFGHPEVYI+ILPGFGIIS
Sbjct: 218 DRHYNTMFFESSNSGDPVLYQHLFWFFGHPEVYIMILPGFGIIS 261



 Score = 33.9 bits (74), Expect = 3.4
 Identities = 19/74 (25%), Positives = 28/74 (37%)
 Frame = +2

Query: 32  QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 211
           +IYN + T H                  N L P++LG  D+ +PR+N             
Sbjct: 60  EIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVL 119

Query: 212 XXXXXIVENGAGTG 253
                 +E G+GTG
Sbjct: 120 VVSSIYLEIGSGTG 133


>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
           Nematoda|Rep: Cytochrome c oxidase subunit I -
           Onchocerca volvulus
          Length = 548

 Score = 79.0 bits (186), Expect = 9e-14
 Identities = 33/47 (70%), Positives = 40/47 (85%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           ++ DRN NTSF+D   GG+P+LYQHLF FFGHPEVY++ILP FGIIS
Sbjct: 219 LLLDRNFNTSFYDTKKGGNPLLYQHLFWFFGHPEVYVIILPVFGIIS 265



 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = +2

Query: 5   NPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNI 178
           +PG     G  Q+YN+++T H                  N ++PL+LGAP++AFPR+N +
Sbjct: 52  SPGGHLFFGSGQVYNSVLTMHGVLMIFFLVMPILIGGFGNWMLPLMLGAPEMAFPRVNAL 111

Query: 179 RFXXXXXXXXXXXXXXIVENGAGTG*QFTP 268
            F               +  G G+   F P
Sbjct: 112 SFWFTFVALLMVYQSFFIGGGPGSSWTFYP 141


>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
           Bilateria|Rep: Cytochrome c oxidase subunit I -
           Homalopoma maculosa
          Length = 219

 Score = 78.6 bits (185), Expect = 1e-13
 Identities = 39/84 (46%), Positives = 47/84 (55%)
 Frame = +2

Query: 2   GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181
           G PGS IG+DQ+YN +VTAHA                 N LVPL+LGAPD+AFPR+NN+ 
Sbjct: 25  GQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNNMS 84

Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253
           F               VE+GAGTG
Sbjct: 85  FWFLPPSLSLLLMSAAVESGAGTG 108



 Score = 59.7 bits (138), Expect = 6e-08
 Identities = 33/66 (50%), Positives = 37/66 (56%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPLS N AH G SVDLAIFSLHLAG+SS                     + + LFV 
Sbjct: 110 TVYPPLSGNTAHAGPSVDLAIFSLHLAGVSSILGAVNFITTVINMRWGAMKIELVSLFVW 169

Query: 436 AVGITA 453
           +V ITA
Sbjct: 170 SVKITA 175



 Score = 58.0 bits (134), Expect = 2e-07
 Identities = 23/27 (85%), Positives = 25/27 (92%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF 580
           ++ DRN NTSFFDPAGGGDPILYQHLF
Sbjct: 192 LLTDRNFNTSFFDPAGGGDPILYQHLF 218


>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
           Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
           Leishmania tarentolae (Sauroleishmania tarentolae)
          Length = 549

 Score = 78.2 bits (184), Expect = 2e-13
 Identities = 33/47 (70%), Positives = 40/47 (85%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           I+ DRN NTSF+D  GGGD IL+QH+F FFGHPEVYI++LP FG+IS
Sbjct: 212 ILCDRNFNTSFYDVVGGGDLILFQHIFWFFGHPEVYIILLPVFGLIS 258



 Score = 50.8 bits (116), Expect = 3e-05
 Identities = 24/81 (29%), Positives = 34/81 (41%)
 Frame = +2

Query: 11  GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXX 190
           G L GD Q YN ++T+H                  N  +P++ G PD+ FPR+NN+ F  
Sbjct: 48  GILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWM 107

Query: 191 XXXXXXXXXXXXIVENGAGTG 253
                       + E G G G
Sbjct: 108 YLAGFGCVVNGFLTEEGMGVG 128


>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
           Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
           - Placozoan sp. BZ2423
          Length = 498

 Score = 76.6 bits (180), Expect = 5e-13
 Identities = 37/83 (44%), Positives = 46/83 (55%)
 Frame = +2

Query: 5   NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184
           +PGS++GDD +YN IVTAHA                 N  VPL++GAPD+AFPR+NNI F
Sbjct: 44  SPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWFVPLMIGAPDMAFPRLNNISF 103

Query: 185 XXXXXXXXXXXXXXIVENGAGTG 253
                         +VE GAGTG
Sbjct: 104 WLLPPALFLLLGSSLVEQGAGTG 126



 Score = 59.3 bits (137), Expect = 8e-08
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFG 592
           ++ DR  NT+FFDPAGGGDPILYQHLF FFG
Sbjct: 210 LLTDRYFNTTFFDPAGGGDPILYQHLFWFFG 240



 Score = 58.0 bits (134), Expect = 2e-07
 Identities = 32/66 (48%), Positives = 39/66 (59%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPL+S  AH G SVD+AIFSLHLAG+SS                   +  ++PLFV 
Sbjct: 128 TVYPPLASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVW 187

Query: 436 AVGITA 453
           +V ITA
Sbjct: 188 SVLITA 193


>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
           cellular organisms|Rep: Cytochrome c oxidase subunit I -
           Pandaka lidwilli
          Length = 507

 Score = 74.5 bits (175), Expect = 2e-12
 Identities = 37/82 (45%), Positives = 46/82 (56%)
 Frame = +2

Query: 8   PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 187
           PG+L+GDDQIYN IVTAHA                 N L+PL++GAPD+AFPR+NN+ F 
Sbjct: 33  PGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFW 92

Query: 188 XXXXXXXXXXXXXIVENGAGTG 253
                         +E GAGTG
Sbjct: 93  LLPPSFLLLLASSGIEAGAGTG 114



 Score = 62.9 bits (146), Expect = 6e-09
 Identities = 36/66 (54%), Positives = 38/66 (57%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPL+ N+AH G SVDL IFSLHLAGISS                   S  Q PLFV 
Sbjct: 116 TVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVW 175

Query: 436 AVGITA 453
           AV ITA
Sbjct: 176 AVLITA 181


>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
           Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
           Dicyema misakiense
          Length = 473

 Score = 74.1 bits (174), Expect = 3e-12
 Identities = 30/47 (63%), Positives = 38/47 (80%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           I+ D++L T F+D   GGDP+LYQHLF FFGHPEVY++ILP FG+ S
Sbjct: 193 ILTDKHLGTCFYDATMGGDPLLYQHLFWFFGHPEVYVVILPVFGLFS 239



 Score = 34.3 bits (75), Expect = 2.6
 Identities = 18/31 (58%), Positives = 22/31 (70%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 348
           T YPPLSS       SV+ ++FSLHLAGI+S
Sbjct: 117 TFYPPLSS----LSPSVEFSVFSLHLAGIAS 143


>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
           borealis
          Length = 513

 Score = 73.7 bits (173), Expect = 3e-12
 Identities = 40/84 (47%), Positives = 47/84 (55%)
 Frame = +2

Query: 2   GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181
           G PG+L+GDDQ  N IVTAHA                 N LVPL++GAPD+AFPR+NN+ 
Sbjct: 43  GQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMS 102

Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253
           F               VE GAGTG
Sbjct: 103 FWLLPPSFLLLLASSTVEAGAGTG 126


>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
           Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
           1 - Munidopsis verrucosus
          Length = 154

 Score = 73.3 bits (172), Expect = 5e-12
 Identities = 47/116 (40%), Positives = 56/116 (48%)
 Frame = +1

Query: 103 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKNCRKWCRNRITVYPPLSSN 282
           W IWKL             P NK YKILT  PL Y    K+N             PL+S+
Sbjct: 28  WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRNSS-----------PLASS 76

Query: 283 IAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 450
           IAH G SVD+AIFSLHLAG+SS                   + D++PLF+ AV IT
Sbjct: 77  IAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFIT 132


>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
           Endopterygota|Rep: Cytochrome c oxidase subunit I -
           Copitarsia incommoda
          Length = 150

 Score = 70.9 bits (166), Expect = 2e-11
 Identities = 32/44 (72%), Positives = 33/44 (75%)
 Frame = +1

Query: 514 KLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFTRIWYNFSY 645
           K KYIIF S W     F+STFILIFWT  SLYFNFT IWYNFSY
Sbjct: 7   KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFNFTSIWYNFSY 50


>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
           1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
           n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
           (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
           Synechocystis sp. (strain PCC 6803)
          Length = 551

 Score = 70.5 bits (165), Expect = 3e-11
 Identities = 28/39 (71%), Positives = 34/39 (87%)
 Frame = +2

Query: 524 TSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           TSFF+P GGGDP++YQHLF F+ HP VYI+ILP FG+IS
Sbjct: 228 TSFFNPVGGGDPVVYQHLFWFYSHPAVYIMILPFFGVIS 266



 Score = 33.5 bits (73), Expect = 4.5
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 32  QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184
           ++YN ++T H                  N L+PL++G  D+AFPR+N + F
Sbjct: 67  EMYNQLMTLHGTIMIFLWIVPAGAAFA-NYLIPLMVGTEDMAFPRLNAVAF 116


>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
           Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
           maris DSM 8797
          Length = 754

 Score = 70.1 bits (164), Expect = 4e-11
 Identities = 30/47 (63%), Positives = 37/47 (78%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           ++ DR L ++FFDP  GG  +L+QH F  FGHPEVYILILPGFG+IS
Sbjct: 228 LLIDRWLGSAFFDPTRGGSAVLWQHYFWIFGHPEVYILILPGFGMIS 274



 Score = 33.1 bits (72), Expect = 5.9
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +2

Query: 116 N*LVPLILGAPDIAFPRINNIRF 184
           N  VPL++GA D+AFPR+N+  F
Sbjct: 99  NYFVPLMIGARDVAFPRLNSFGF 121


>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
           Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
           Tetrahymena pyriformis
          Length = 698

 Score = 69.3 bits (162), Expect = 7e-11
 Identities = 30/44 (68%), Positives = 36/44 (81%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           DR+  T+FF+ A GGDPIL QHLF FFGHPEVY+LI+P FG I+
Sbjct: 373 DRHWQTTFFEYAYGGDPILSQHLFWFFGHPEVYVLIIPTFGFIN 416



 Score = 36.7 bits (81), Expect = 0.48
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +2

Query: 23  GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184
           GD   Y  +VTAH                  N L+P  +G+ D+A+PR+N+I F
Sbjct: 99  GDSLRYLQVVTAHGLIMVFFVVVPILFGGFANFLIPYHVGSKDVAYPRLNSIGF 152


>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
           cellular organisms|Rep: Cytochrome C oxidase subunit I -
           Rhizobium loti (Mesorhizobium loti)
          Length = 623

 Score = 68.9 bits (161), Expect = 1e-10
 Identities = 29/48 (60%), Positives = 38/48 (79%)
 Frame = +2

Query: 497 NIINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           ++I DR + T FF+PA GGD +L+QHLF FFGHPEVYI+ LP  G++S
Sbjct: 224 SLILDRLVGTHFFNPAEGGDVLLWQHLFWFFGHPEVYIIFLPAVGMVS 271


>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
           Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
           - Halobacterium salinarium (Halobacterium halobium)
          Length = 593

 Score = 68.9 bits (161), Expect = 1e-10
 Identities = 30/47 (63%), Positives = 37/47 (78%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           ++ DRN  T+FF  AGG DPI +QHLF FFGHPEVY+L+LP  GI+S
Sbjct: 264 LLLDRNFGTTFFTVAGG-DPIFWQHLFWFFGHPEVYVLVLPPMGIVS 309



 Score = 32.7 bits (71), Expect = 7.8
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 35  IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184
           +YN ++T+H                  N  +PL++ A D+AFPRIN I F
Sbjct: 109 LYNGLLTSHGITMLFLFGTPMIAAFG-NYFIPLLIDADDMAFPRINAIAF 157


>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
           Bacteria|Rep: Cytochrome c oxidase subunit I -
           Synechococcus sp. (strain CC9311)
          Length = 564

 Score = 68.1 bits (159), Expect = 2e-10
 Identities = 27/47 (57%), Positives = 35/47 (74%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           ++ D +  TSFF P GGGDP+L+QH F F+ HP VY+L+LP FGI S
Sbjct: 235 LLFDLSFGTSFFRPEGGGDPVLFQHFFWFYSHPAVYVLVLPVFGIFS 281



 Score = 35.9 bits (79), Expect = 0.84
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 8   PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184
           P  L+ D  +YN + T H                  N L+P ++GAPD+AFP++N   F
Sbjct: 69  PADLV-DPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMIGAPDMAFPKLNAAAF 125


>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
           Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
           RS-1
          Length = 641

 Score = 68.1 bits (159), Expect = 2e-10
 Identities = 31/47 (65%), Positives = 36/47 (76%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           ++ DR+  T FF P  GGD +L+QHLF FFGHPEVYILILP  GIIS
Sbjct: 227 LLFDRHFGTRFFLPNLGGDAVLWQHLFWFFGHPEVYILILPTMGIIS 273


>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
           Watasenia scintillans|Rep: Cytochrome c oxidase subunit
           I - Watasenia scintillans (Sparkling enope)
          Length = 217

 Score = 68.1 bits (159), Expect = 2e-10
 Identities = 31/61 (50%), Positives = 38/61 (62%)
 Frame = +2

Query: 2   GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181
           G PGSL+ DDQ+YN +VTAH                  N LVPL+LGAPD+AFPR+NN+ 
Sbjct: 26  GQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMS 85

Query: 182 F 184
           F
Sbjct: 86  F 86



 Score = 33.1 bits (72), Expect = 5.9
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +1

Query: 295 GRSVDLAIFSLHLAGISS 348
           G SVDLAIF LHLAG+SS
Sbjct: 122 GPSVDLAIFPLHLAGVSS 139


>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
           gracilis|Rep: Cytochrome oxidase subunit I - Euglena
           gracilis
          Length = 495

 Score = 66.9 bits (156), Expect = 4e-10
 Identities = 28/47 (59%), Positives = 38/47 (80%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           ++ DRN+N++ +D  G  DP+LYQHLF FFGHPEVY++ILP FG+ S
Sbjct: 221 LLLDRNINSTIYDVIG--DPVLYQHLFWFFGHPEVYVIILPVFGLTS 265



 Score = 33.1 bits (72), Expect = 5.9
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 35  IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184
           IYN  +T H                  N L+P+++G  +++ PR+N I F
Sbjct: 63  IYNNWITIHGLIMLFVFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISF 112


>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI5 (EC
           3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
           intron-encoded endonuclease aI5 precursor [Contains:
           Truncated non-functional cytochrome oxidase 1;
           Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
           maydis (Smut fungus)
          Length = 536

 Score = 66.5 bits (155), Expect = 5e-10
 Identities = 34/79 (43%), Positives = 41/79 (51%)
 Frame = +2

Query: 17  LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 196
           L GD Q+YN I+TAHA                 N LVP+++GAPD+AFPR+NNI F    
Sbjct: 47  LNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLP 106

Query: 197 XXXXXXXXXXIVENGAGTG 253
                      VE GAGTG
Sbjct: 107 PSLILLLASAFVEQGAGTG 125



 Score = 58.0 bits (134), Expect = 2e-07
 Identities = 32/66 (48%), Positives = 38/66 (57%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPLS   +H G SVDLAIFSLHL+GISS                   +  +LPLFV 
Sbjct: 127 TVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVW 186

Query: 436 AVGITA 453
           A+ +TA
Sbjct: 187 AIFVTA 192



 Score = 56.8 bits (131), Expect = 4e-07
 Identities = 22/27 (81%), Positives = 25/27 (92%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF 580
           ++ DRN NTSF+DPAGGGDPILYQHLF
Sbjct: 209 LLTDRNFNTSFYDPAGGGDPILYQHLF 235


>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI4 (EC
           3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
           intron-encoded endonuclease aI4 precursor [Contains:
           Truncated non-functional cytochrome oxidase 1;
           Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
           maydis (Smut fungus)
          Length = 530

 Score = 66.5 bits (155), Expect = 5e-10
 Identities = 34/79 (43%), Positives = 41/79 (51%)
 Frame = +2

Query: 17  LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 196
           L GD Q+YN I+TAHA                 N LVP+++GAPD+AFPR+NNI F    
Sbjct: 47  LNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLP 106

Query: 197 XXXXXXXXXXIVENGAGTG 253
                      VE GAGTG
Sbjct: 107 PSLILLLASAFVEQGAGTG 125



 Score = 58.0 bits (134), Expect = 2e-07
 Identities = 32/66 (48%), Positives = 38/66 (57%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPLS   +H G SVDLAIFSLHL+GISS                   +  +LPLFV 
Sbjct: 127 TVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVW 186

Query: 436 AVGITA 453
           A+ +TA
Sbjct: 187 AIFVTA 192


>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI2 (EC
           3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
           intron-encoded endonuclease aI2 precursor [Contains:
           Truncated non-functional cytochrome oxidase 1;
           Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
           maydis (Smut fungus)
          Length = 533

 Score = 66.5 bits (155), Expect = 5e-10
 Identities = 34/79 (43%), Positives = 41/79 (51%)
 Frame = +2

Query: 17  LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 196
           L GD Q+YN I+TAHA                 N LVP+++GAPD+AFPR+NNI F    
Sbjct: 47  LNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLP 106

Query: 197 XXXXXXXXXXIVENGAGTG 253
                      VE GAGTG
Sbjct: 107 PSLILLLASAFVEQGAGTG 125


>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
           subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
           terminal oxidase, subunit I - Haloquadratum walsbyi
           (strain DSM 16790)
          Length = 634

 Score = 66.1 bits (154), Expect = 7e-10
 Identities = 31/48 (64%), Positives = 37/48 (77%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           ++ DRN  TSFF  AG G  IL+QHLF FFGHPEVYI++LP  GIIS+
Sbjct: 296 LLFDRNFGTSFF--AGEGGAILWQHLFWFFGHPEVYIIVLPPMGIISY 341



 Score = 41.9 bits (94), Expect = 0.013
 Identities = 21/60 (35%), Positives = 32/60 (53%)
 Frame = +2

Query: 5   NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184
           +PG  +  +  YN+++T+H                  N L+PL++GA D+AFPRIN I F
Sbjct: 125 DPGMTVISNTFYNSLLTSHGITMLFLFATPIIAAFS-NYLIPLLIGADDMAFPRINAIAF 183


>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
           Naupactini|Rep: Cytochrome c oxidase subunit I -
           Galapaganus collaris
          Length = 406

 Score = 64.9 bits (151), Expect = 2e-09
 Identities = 26/32 (81%), Positives = 29/32 (90%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGH 595
           ++ DRN+NTSFFDPAGGGDPILYQHLF F GH
Sbjct: 128 LLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159



 Score = 60.1 bits (139), Expect = 4e-08
 Identities = 33/66 (50%), Positives = 39/66 (59%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TV PPLS+NIAH G SVDLAIFSLH+AG+ S                   +  ++PLFV 
Sbjct: 46  TVSPPLSANIAHEGSSVDLAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVW 105

Query: 436 AVGITA 453
           AV ITA
Sbjct: 106 AVEITA 111



 Score = 35.1 bits (77), Expect = 1.5
 Identities = 21/46 (45%), Positives = 23/46 (50%)
 Frame = +2

Query: 131 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*QFTP 268
           L LGAPD  FPR  N+ F               VE GAGTG   +P
Sbjct: 4   LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSP 49


>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
           1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
           aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
           oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
           polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
           subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
          Length = 622

 Score = 64.5 bits (150), Expect = 2e-09
 Identities = 27/44 (61%), Positives = 34/44 (77%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           DR   T+FF+P  GG+ ++++HLF  FGHPEVYILILP FGI S
Sbjct: 221 DRLFGTNFFNPELGGNTVIWEHLFWIFGHPEVYILILPAFGIFS 264


>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
           Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
           subunit I - Myxococcus xanthus (strain DK 1622)
          Length = 556

 Score = 64.1 bits (149), Expect = 3e-09
 Identities = 24/36 (66%), Positives = 31/36 (86%)
 Frame = +2

Query: 533 FDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           FDPA GGDP+L+QHLF F+ HP VYI++LP FG++S
Sbjct: 246 FDPARGGDPVLFQHLFWFYSHPAVYIMVLPSFGVMS 281



 Score = 39.9 bits (89), Expect = 0.051
 Identities = 20/55 (36%), Positives = 25/55 (45%)
 Frame = +2

Query: 8   PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 172
           PG  I D   YN   T H                  N ++PL+LGA D+AFPR+N
Sbjct: 74  PGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLMLGAKDVAFPRLN 128


>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
           Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
           Sulfolobus acidocaldarius
          Length = 788

 Score = 64.1 bits (149), Expect = 3e-09
 Identities = 28/44 (63%), Positives = 33/44 (75%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           +R   T FFD A GG P+L+Q LF FFGHPEVYILILP  G++S
Sbjct: 210 ERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVYILILPAMGLVS 253


>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
           (EC 1.9.3.1) (Alternative cytochrome c oxidase
           polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
           subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
           oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
           oxidase polypeptide I) (Cytochrome BB3 subunit 1)
           (Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
          Length = 591

 Score = 64.1 bits (149), Expect = 3e-09
 Identities = 32/57 (56%), Positives = 38/57 (66%), Gaps = 10/57 (17%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPA----------GGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           ++ DR L TSFF P           GGG P+L+QHLF FFGHPEVYI+ LP FGI+S
Sbjct: 239 LLLDRLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFWFFGHPEVYIVALPAFGIVS 295


>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
           Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
           1 - Corynebacterium glutamicum (Brevibacterium flavum)
          Length = 584

 Score = 64.1 bits (149), Expect = 3e-09
 Identities = 28/47 (59%), Positives = 35/47 (74%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           ++ DR L    +DPA GG  +L+QHLF FFGHPEVY+L LP FGI+S
Sbjct: 235 VLYDRKLGGHLYDPANGGS-LLWQHLFWFFGHPEVYVLALPFFGIVS 280



 Score = 33.1 bits (72), Expect = 5.9
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +2

Query: 116 N*LVPLILGAPDIAFPRINNIRF 184
           N ++PL +GAPD+AFPR+N   F
Sbjct: 105 NYVLPLQIGAPDVAFPRLNAFGF 127


>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
           cellular organisms|Rep: Cytochrome C oxidase subunit I
           /III - Pyrobaculum aerophilum
          Length = 800

 Score = 63.3 bits (147), Expect = 5e-09
 Identities = 28/52 (53%), Positives = 37/52 (71%), Gaps = 5/52 (9%)
 Frame = +2

Query: 500 IINDRNLNTSFF-----DPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           ++ +R+L   FF     DPA  GDP L+QH+F FFGHPEVYIL+LP  G++S
Sbjct: 214 LLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWFFGHPEVYILVLPAMGLVS 265


>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
           Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
           cenocepacia MC0-3
          Length = 1004

 Score = 62.9 bits (146), Expect = 6e-09
 Identities = 26/44 (59%), Positives = 32/44 (72%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           DRN  T FFD A GG P+L+QHLF  F HP VY+++LP  GI+S
Sbjct: 248 DRNAGTHFFDVAHGGRPLLWQHLFWMFAHPWVYVVVLPAMGIVS 291


>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
           Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
           Aquifex aeolicus
          Length = 485

 Score = 62.1 bits (144), Expect = 1e-08
 Identities = 24/44 (54%), Positives = 34/44 (77%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           D+ L T+FF+PA GGDP++YQ++F F+ HP VY+ +LP FG  S
Sbjct: 168 DKYLGTNFFNPAKGGDPLIYQNIFWFYSHPVVYVQVLPVFGFYS 211



 Score = 41.1 bits (92), Expect = 0.022
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +2

Query: 8   PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 172
           PG  + D + YN ++T H                  N L+PL++GA D+AFPR+N
Sbjct: 2   PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLN 56


>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
           Cystobacterineae|Rep: Cytochrome-c oxidase -
           Anaeromyxobacter sp. Fw109-5
          Length = 596

 Score = 62.1 bits (144), Expect = 1e-08
 Identities = 29/51 (56%), Positives = 36/51 (70%), Gaps = 5/51 (9%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPA-----GGGDPILYQHLF*FFGHPEVYILILPGFGII 637
           ++ DR+  T FF        GGGDPIL+QHLF  FGHPEVYI+ILP +GI+
Sbjct: 242 LLLDRSFGTEFFVAGASAVRGGGDPILWQHLFWIFGHPEVYIMILPAWGIL 292



 Score = 34.3 bits (75), Expect = 2.6
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +2

Query: 38  YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184
           Y  I T H                  N L+PL++GA D+AFPR+N   F
Sbjct: 86  YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSF 134


>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
           Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
           Mesorhizobium sp. (strain BNC1)
          Length = 845

 Score = 61.7 bits (143), Expect = 1e-08
 Identities = 25/44 (56%), Positives = 32/44 (72%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           +R+    FF    GGDP+L+QHLF FFGHPEVYI+ LP  G++S
Sbjct: 238 ERSFGWPFFTAERGGDPLLWQHLFWFFGHPEVYIIFLPAAGLVS 281


>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
           Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
           bacterium (strain Ellin345)
          Length = 595

 Score = 60.9 bits (141), Expect = 3e-08
 Identities = 25/35 (71%), Positives = 28/35 (80%)
 Frame = +2

Query: 539 PAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           P GGG  +L+QHLF FFGHPEVYI ILP  GI+SH
Sbjct: 270 PHGGGSALLWQHLFWFFGHPEVYIAILPAMGIVSH 304


>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
           Bacteria|Rep: Cytochrome C oxidase subunit I -
           Symbiobacterium thermophilum
          Length = 628

 Score = 60.5 bits (140), Expect = 3e-08
 Identities = 27/44 (61%), Positives = 30/44 (68%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           DR    +FF+   GG  + YQHLF  FGHPEVYILILP  GIIS
Sbjct: 232 DRTFAANFFEVLRGGSVVFYQHLFWTFGHPEVYILILPAMGIIS 275


>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
           Rhodobacteraceae|Rep: Cytochrome c, monohaem -
           Rhodobacter sphaeroides ATCC 17025
          Length = 878

 Score = 60.1 bits (139), Expect = 4e-08
 Identities = 24/38 (63%), Positives = 29/38 (76%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 622
           +R  +  FFDP  GGDP+L+QHLF  FGHPEVYI+ LP
Sbjct: 254 ERGFDWPFFDPERGGDPLLWQHLFWIFGHPEVYIIFLP 291


>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
           shibae DFL 12|Rep: Cytochrome-c oxidase -
           Dinoroseobacter shibae DFL 12
          Length = 853

 Score = 60.1 bits (139), Expect = 4e-08
 Identities = 25/44 (56%), Positives = 32/44 (72%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           +R L   FFD   GGDP+L+QHLF  FGHPEVYI+ LP  G+++
Sbjct: 254 ERLLGLPFFDHTLGGDPLLWQHLFWLFGHPEVYIIFLPAAGMVA 297


>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
           group|Rep: COX1-i5 protein - Yarrowia lipolytica
           (Candida lipolytica)
          Length = 608

 Score = 59.3 bits (137), Expect = 8e-08
 Identities = 26/39 (66%), Positives = 31/39 (79%)
 Frame = +2

Query: 503 INDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 619
           I DRN NTSFF+ AGGGD +LYQHLF ++ HPEV I+ L
Sbjct: 216 IFDRNFNTSFFEYAGGGDAVLYQHLFYWWNHPEVKIICL 254



 Score = 56.8 bits (131), Expect = 4e-07
 Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
 Frame = +2

Query: 5   NPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNI 178
           N GS  L G+ Q +N ++TAHA                 N L+PL+LGA D+AF R+NNI
Sbjct: 47  NTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFARLNNI 106

Query: 179 RFXXXXXXXXXXXXXXIVENGAGTG*QFTPHFHL 280
            F              +VE GAGTG  +T +F L
Sbjct: 107 SFWLLVPSLILILTSALVEAGAGTG--WTVYFPL 138



 Score = 47.2 bits (107), Expect = 3e-04
 Identities = 27/66 (40%), Positives = 34/66 (51%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVY PL+   +H G +VDLAIFSLHL+G SS                    ++ +PLF  
Sbjct: 133 TVYFPLAGIQSHSGPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENVPLFAW 192

Query: 436 AVGITA 453
           AV  TA
Sbjct: 193 AVLFTA 198


>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
           Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
           sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
          Length = 607

 Score = 58.8 bits (136), Expect = 1e-07
 Identities = 25/44 (56%), Positives = 32/44 (72%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           +R  +  FF    GGDP+L+QHLF FFGHPEVYI+ LP  G++S
Sbjct: 297 ERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVYIIFLPAAGMVS 340


>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
           flagellatus KT|Rep: Cytochrome-c oxidase -
           Methylobacillus flagellatus (strain KT / ATCC 51484 /
           DSM 6875)
          Length = 631

 Score = 58.8 bits (136), Expect = 1e-07
 Identities = 26/44 (59%), Positives = 31/44 (70%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           DR     FF  A  GDPIL+QHLF FFGHPEVYI+ +P  G++S
Sbjct: 235 DRMAGMHFFT-AASGDPILWQHLFWFFGHPEVYIIFIPALGMVS 277


>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
           Bacteria|Rep: Cytochrome c oxidase subunit I type -
           Anaeromyxobacter sp. Fw109-5
          Length = 555

 Score = 58.8 bits (136), Expect = 1e-07
 Identities = 22/36 (61%), Positives = 28/36 (77%)
 Frame = +2

Query: 533 FDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           FDPA GGDP+L+QH F F+ HP VYI++LP   +IS
Sbjct: 239 FDPARGGDPVLFQHFFWFYSHPAVYIMVLPAMAVIS 274



 Score = 43.2 bits (97), Expect = 0.006
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = +2

Query: 8   PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 187
           PG  I D   YN + T H                  N L+P+++GA D+AFP++N + F 
Sbjct: 67  PGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIGAKDVAFPKLNLLSF- 125

Query: 188 XXXXXXXXXXXXXIVENGAGTG*QF-TPH 271
                        +V+ GA TG  F TP+
Sbjct: 126 YVYLAGAVVALFGMVQGGADTGWTFYTPY 154


>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
           polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
           (Liverwort)
          Length = 434

 Score = 58.8 bits (136), Expect = 1e-07
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
 Frame = +2

Query: 8   PGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181
           PG+ I  G+ Q+YN ++TAHA                 N  VP+++G+PD+AFPR+NNI 
Sbjct: 46  PGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGSPDMAFPRLNNIS 105

Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253
           F              +VE G G+G
Sbjct: 106 FWLLPPSLLLLLSSALVEVGCGSG 129


>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
           precursor (DNA endonuclease I- SceII) [Contains:
           Truncated non-functional cytochrome oxidase 1; DNA
           endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
           endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
           Intron-encoded DNA endonuclease aI4 precursor (DNA
           endonuclease I- SceII) [Contains: Truncated
           non-functional cytochrome oxidase 1; DNA endonuclease
           aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
           - Saccharomyces cerevisiae (Baker's yeast)
          Length = 556

 Score = 58.8 bits (136), Expect = 1e-07
 Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
 Frame = +2

Query: 8   PGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181
           PGS  L G+ Q++N +V  HA                 N L+PL++GA D AFPRINNI 
Sbjct: 43  PGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIA 102

Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253
           F              +VE+GAGTG
Sbjct: 103 FWVLPMGLVCLVTSTLVESGAGTG 126



 Score = 58.4 bits (135), Expect = 1e-07
 Identities = 33/67 (49%), Positives = 38/67 (56%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPLSS  AH G SVDLAIF+LHL  ISS                   +  +LPLFV 
Sbjct: 128 TVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVW 187

Query: 436 AVGITAF 456
           ++ ITAF
Sbjct: 188 SIFITAF 194



 Score = 57.2 bits (132), Expect = 3e-07
 Identities = 24/40 (60%), Positives = 31/40 (77%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 619
           ++ DRN NTSFF+ +GGGDPILY+HLF FFG     I++L
Sbjct: 210 LLLDRNFNTSFFEVSGGGDPILYEHLFWFFGQTVATIIML 249


>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
           oxidase, subunit 1; n=2; Thermoprotei|Rep:
           Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
           Cenarchaeum symbiosum
          Length = 508

 Score = 58.4 bits (135), Expect = 1e-07
 Identities = 25/53 (47%), Positives = 36/53 (67%)
 Frame = +2

Query: 479 FSWSYYNIINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 637
           F+ +   ++ DR   + FF+PA GGDPI Y HLF F  HPEVY+L++P  G++
Sbjct: 204 FAAALLMLLTDRLGVSGFFNPAVGGDPIAYAHLFWFTFHPEVYVLVIPAIGMM 256


>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
           Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
           Roseovarius nubinhibens ISM
          Length = 818

 Score = 58.0 bits (134), Expect = 2e-07
 Identities = 25/44 (56%), Positives = 30/44 (68%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           +R  +  FF  A GGD +L+QHLF  FGHPEVYI+ LP  G IS
Sbjct: 228 ERAFDMPFFQAAAGGDALLWQHLFWLFGHPEVYIIFLPAAGAIS 271


>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
           1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
           thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
           (EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
           thermophilus (strain HB8 / ATCC 27634 / DSM 579)
          Length = 791

 Score = 58.0 bits (134), Expect = 2e-07
 Identities = 21/47 (44%), Positives = 35/47 (74%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           ++ +R +  S+F+PA GGDP+L+Q  F F+ HP VY+++LP  GI++
Sbjct: 219 VLLERKIGLSWFNPAVGGDPVLFQQFFWFYSHPTVYVMLLPYLGILA 265



 Score = 35.1 bits (77), Expect = 1.5
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 38  YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 172
           YN I+T H                  N +VPL+LGA D+A PR+N
Sbjct: 66  YNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVALPRVN 110


>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
           Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
           - Aeropyrum pernix
          Length = 815

 Score = 58.0 bits (134), Expect = 2e-07
 Identities = 27/48 (56%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
 Frame = +2

Query: 500 IINDRNLNTSFF-DPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           ++ DRNL T FF +PAGG   +L+ HLF FFGHPEVYIL+ P  G ++
Sbjct: 218 LLLDRNLGTEFFLNPAGGA--LLWDHLFWFFGHPEVYILLFPALGAMA 263


>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
           Proteobacteria|Rep: Quinol oxidase subunit I -
           Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
          Length = 825

 Score = 56.4 bits (130), Expect = 6e-07
 Identities = 25/44 (56%), Positives = 29/44 (65%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           +R     FF  A GGD +L+QHLF  FGHPEVYI+ LP  G IS
Sbjct: 228 ERAFGLPFFQVAEGGDSLLWQHLFWLFGHPEVYIIFLPAAGAIS 271


>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
           lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
           (Candida lipolytica)
          Length = 457

 Score = 56.4 bits (130), Expect = 6e-07
 Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = +2

Query: 5   NPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNI 178
           N GS  L G+ Q +N ++TAHA                 N L+PL+LGA D+AF R+NNI
Sbjct: 47  NTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFARLNNI 106

Query: 179 RFXXXXXXXXXXXXXXIVENGAGTG 253
            F              +VE GAGTG
Sbjct: 107 SFWLLVPSLILILTSALVEAGAGTG 131


>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
           n=1; Saccharomyces castellii|Rep: I-SceII DNA
           endonuclease-like protein - Saccharomyces castellii
           (Yeast)
          Length = 598

 Score = 56.4 bits (130), Expect = 6e-07
 Identities = 29/79 (36%), Positives = 40/79 (50%)
 Frame = +2

Query: 17  LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 196
           L G++Q++N +V  HA                 N ++PL++GA D AFPRINNI F    
Sbjct: 48  LHGNNQLFNVLVVGHAILMIFFMVMPALIGGFGNYMLPLMIGATDTAFPRINNIGFWLLP 107

Query: 197 XXXXXXXXXXIVENGAGTG 253
                     +VE+GAGTG
Sbjct: 108 MGLVCLVTSTLVESGAGTG 126



 Score = 56.0 bits (129), Expect = 7e-07
 Identities = 23/31 (74%), Positives = 27/31 (87%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFG 592
           ++ DRN NTSFF+ AGGGDPILY+HLF FFG
Sbjct: 210 LLLDRNFNTSFFEVAGGGDPILYEHLFWFFG 240



 Score = 54.8 bits (126), Expect = 2e-06
 Identities = 31/66 (46%), Positives = 37/66 (56%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPL+S  AH G SVDLAIF+LH+  ISS                   +  +LPLFV 
Sbjct: 128 TVYPPLASIQAHSGPSVDLAIFALHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVW 187

Query: 436 AVGITA 453
           A+ ITA
Sbjct: 188 AILITA 193


>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
           n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
           ubiquinol oxidase subunit I - Carsonella ruddii (strain
           PV)
          Length = 606

 Score = 55.2 bits (127), Expect = 1e-06
 Identities = 26/49 (53%), Positives = 32/49 (65%)
 Frame = +2

Query: 494 YNIINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           + I  DR L+T F+    GG  +LY +L   +GHPEVYILILP FGI S
Sbjct: 246 FQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILILPSFGIFS 294


>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
           polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
           subunit 1); n=20; cellular organisms|Rep: Alternative
           Cytochrome c oxidase polypeptide I (Cytochrome BB3
           subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
           marina ATCC 23134
          Length = 635

 Score = 55.2 bits (127), Expect = 1e-06
 Identities = 30/57 (52%), Positives = 37/57 (64%), Gaps = 10/57 (17%)
 Frame = +2

Query: 500 IINDRNLNTSFFDP----AG------GGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           +I DR+L TSFF      AG      GG P+L+QHLF F GHPEVYI+++P  GI S
Sbjct: 261 LIFDRSLGTSFFLSEIYIAGEALHHQGGSPVLFQHLFWFLGHPEVYIVLIPALGITS 317


>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
           Blastopirellula marina DSM 3645|Rep: Cytochrome c
           oxidase subunit I - Blastopirellula marina DSM 3645
          Length = 595

 Score = 54.8 bits (126), Expect = 2e-06
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 11/60 (18%)
 Frame = +2

Query: 494 YNIINDRNLNTSFFDP-----------AGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           + ++ DR + T FF P           AGGG P+L+QHLF F+ HP VYI+ILP  G++S
Sbjct: 245 FMMLADRLIGTGFFLPEGLVVNNSPMAAGGGQPLLWQHLFWFYSHPAVYIMILPAMGMVS 304



 Score = 35.9 bits (79), Expect = 0.84
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 32  QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184
           + Y  +VT HA                 N L+PL++GA D+AFP +N + +
Sbjct: 86  EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSY 136


>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
           Cox-i3 protein - Candida stellata (Yeast)
          Length = 588

 Score = 54.8 bits (126), Expect = 2e-06
 Identities = 28/66 (42%), Positives = 39/66 (59%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           T+YPPL+S  +H G S+D+AIF+LHL+G+SS                    + +LPLFV 
Sbjct: 145 TLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVW 204

Query: 436 AVGITA 453
           +V ITA
Sbjct: 205 SVLITA 210



 Score = 53.6 bits (123), Expect = 4e-06
 Identities = 23/42 (54%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGH--PEVYILIL 619
           ++ DRN NTSFF  +GGGDP+LY+H+F FFG   P + I+I+
Sbjct: 227 LLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGQIWPIIIIIII 268



 Score = 53.2 bits (122), Expect = 5e-06
 Identities = 27/83 (32%), Positives = 40/83 (48%)
 Frame = +2

Query: 5   NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184
           NP  L+ + Q++N ++TAHA                 N LVPL +G+ D AFPRINN+ F
Sbjct: 61  NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120

Query: 185 XXXXXXXXXXXXXXIVENGAGTG 253
                         +++ G G+G
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSG 143


>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
           Cox-i2 protein - Candida stellata (Yeast)
          Length = 586

 Score = 54.8 bits (126), Expect = 2e-06
 Identities = 28/66 (42%), Positives = 39/66 (59%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           T+YPPL+S  +H G S+D+AIF+LHL+G+SS                    + +LPLFV 
Sbjct: 145 TLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVW 204

Query: 436 AVGITA 453
           +V ITA
Sbjct: 205 SVLITA 210



 Score = 53.2 bits (122), Expect = 5e-06
 Identities = 27/83 (32%), Positives = 40/83 (48%)
 Frame = +2

Query: 5   NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184
           NP  L+ + Q++N ++TAHA                 N LVPL +G+ D AFPRINN+ F
Sbjct: 61  NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120

Query: 185 XXXXXXXXXXXXXXIVENGAGTG 253
                         +++ G G+G
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSG 143



 Score = 46.4 bits (105), Expect = 6e-04
 Identities = 24/45 (53%), Positives = 32/45 (71%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 634
           ++ DRN NTSFF  +GGGDP+LY+H+  F+ +P V ILI    GI
Sbjct: 227 LLMDRNFNTSFFVVSGGGDPLLYEHI--FYKNP-VLILIWLTSGI 268


>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
           cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
           cryptum (strain JF-5)
          Length = 689

 Score = 54.0 bits (124), Expect = 3e-06
 Identities = 24/44 (54%), Positives = 30/44 (68%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           DR L T FF    GG+ +LY +LF  +GHPEVY ++LP FG IS
Sbjct: 275 DRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVVLPAFGFIS 318


>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
           (Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
           1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
           Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
           oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
           BO(3) subunit 1) - Pseudomonas putida
          Length = 672

 Score = 53.2 bits (122), Expect = 5e-06
 Identities = 24/44 (54%), Positives = 31/44 (70%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           DR L+   F    GG+P++Y +LF  +GHPEVYILILP FG+ S
Sbjct: 256 DRYLDFHIFTNELGGNPMMYVNLFWAWGHPEVYILILPAFGVFS 299


>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
           n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
           subunit I - Chromobacterium violaceum
          Length = 680

 Score = 52.8 bits (121), Expect = 7e-06
 Identities = 24/44 (54%), Positives = 31/44 (70%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           DR L+  FF    GG+ ++Y +LF  +GHPEVYIL+LP FGI S
Sbjct: 257 DRYLDFHFFTAELGGNAMMYLNLFWAWGHPEVYILVLPAFGIFS 300


>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
           Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
           1 - Beggiatoa sp. PS
          Length = 525

 Score = 52.8 bits (121), Expect = 7e-06
 Identities = 20/43 (46%), Positives = 29/43 (67%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 637
           D+ + T FFD A GGD + YQ+LF F+ HP VY++ LP   ++
Sbjct: 212 DKYIGTHFFDAAAGGDALTYQNLFWFYSHPAVYVIFLPFMAMV 254



 Score = 36.7 bits (81), Expect = 0.48
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 11  GSLIGDD-QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 172
           G  I DD  +YNT +  H                  N  +PL++GA D+AFPR+N
Sbjct: 47  GPTITDDPSVYNTWLYFHGAAMILAFQIPALTGFFANYFIPLMIGAKDVAFPRVN 101


>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
           (Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
           subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
           Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
           (Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
           subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
           subtilis
          Length = 649

 Score = 52.8 bits (121), Expect = 7e-06
 Identities = 24/44 (54%), Positives = 29/44 (65%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           DR     FF    GG P+L+ +LF  +GHPEVYI+ILP FGI S
Sbjct: 252 DRLFGAHFFTLEAGGMPMLWANLFWIWGHPEVYIVILPAFGIFS 295



 Score = 34.7 bits (76), Expect = 1.9
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +2

Query: 8   PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184
           P +   D   YN I T H                  N +VPL +GA D+AFP +NN+ F
Sbjct: 85  PNNSFLDSNHYNEIFTTHGTIMIIFMAMPFLIGLI-NVVVPLQIGARDVAFPYLNNLSF 142


>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
           Kluyveromyces thermotolerans|Rep: Putative DNA
           endonuclease - Kluyveromyces thermotolerans (Yeast)
          Length = 542

 Score = 52.4 bits (120), Expect = 9e-06
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
 Frame = +2

Query: 8   PGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181
           PG+  L G+ Q++N +V  HA                 N L+PL++GA D++F R+NNI 
Sbjct: 43  PGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGASDMSFARLNNIS 102

Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253
           F              +VE+GAGTG
Sbjct: 103 FWLLPPALVCLVTSTLVESGAGTG 126


>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
           Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
           eutropha (strain C71)
          Length = 703

 Score = 50.8 bits (116), Expect = 3e-05
 Identities = 23/44 (52%), Positives = 30/44 (68%)
 Frame = +2

Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           DR L+  FF    GG+ + + ++F  FGHPEVYILILP FG+ S
Sbjct: 276 DRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVYILILPAFGVYS 319


>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
           Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
           subunit I - Planctomyces maris DSM 8797
          Length = 606

 Score = 50.4 bits (115), Expect = 4e-05
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = +2

Query: 545 GGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           GGG P+L+QHLF F+ HP VYI++LP  G++S
Sbjct: 276 GGGQPLLWQHLFWFYSHPAVYIMLLPIMGMVS 307



 Score = 34.7 bits (76), Expect = 1.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 32  QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184
           + Y  + T HA                 N L+PL++GA D+AFP++N + +
Sbjct: 90  EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSY 140


>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
           Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
           subunit I - Myrmarachne sp. G FSC-2006
          Length = 129

 Score = 50.4 bits (115), Expect = 4e-05
 Identities = 23/31 (74%), Positives = 25/31 (80%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 348
           TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 22  TVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52


>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
           Deinococcus|Rep: Cytochrome c oxidase, subunit I -
           Deinococcus radiodurans
          Length = 820

 Score = 49.6 bits (113), Expect = 6e-05
 Identities = 20/39 (51%), Positives = 26/39 (66%)
 Frame = +2

Query: 518 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 634
           L  S F+P  GG P+LYQ  F F+ HP VY+++LP  GI
Sbjct: 233 LGLSMFNPGIGGVPVLYQQFFWFYSHPAVYVMLLPYLGI 271


>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
           cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
           cretinus
          Length = 153

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 37/113 (32%), Positives = 43/113 (38%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPLSS  AH G SVDLAI+S     I+                    +F    + + 
Sbjct: 43  TVYPPLSSGTAHAGASVDLAIYS---TVINMRSAGITLDRFFFTFSSNFLNFSITFICMI 99

Query: 436 AVGITAFXXXXXXXXXXXXXQYY*RSKLKYIIF*SCWRRRPNFISTFILIFWT 594
                 F                   K KY IF   W   P  +STFILIFWT
Sbjct: 100 CCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152



 Score = 45.6 bits (103), Expect = 0.001
 Identities = 21/41 (51%), Positives = 26/41 (63%)
 Frame = +2

Query: 131 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG 253
           L+LGAPD+AFPR+NN+ F              +VENGAGTG
Sbjct: 1   LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTG 41


>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
           Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
           buchholtzi (Butterflyfish)
          Length = 184

 Score = 47.2 bits (107), Expect = 3e-04
 Identities = 19/20 (95%), Positives = 20/20 (100%)
 Frame = +2

Query: 584 FFGHPEVYILILPGFGIISH 643
           FFGHPEVYILILPGFG+ISH
Sbjct: 2   FFGHPEVYILILPGFGMISH 21


>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
           Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
           Aplidium nordmanni
          Length = 227

 Score = 46.4 bits (105), Expect = 6e-04
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = +1

Query: 259 VYPPLSSNIAHRGRSVDLAIFSLHLAGISS 348
           VYPP SS +AH   +VDL IF LHLAGISS
Sbjct: 118 VYPPXSSGLAHSSGAVDLGIFXLHLAGISS 147



 Score = 32.7 bits (71), Expect = 7.8
 Identities = 21/58 (36%), Positives = 26/58 (44%)
 Frame = +2

Query: 11  GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184
           G +IG  QI    VTA A                   L PL +GAP +A PR+ N+ F
Sbjct: 35  GQVIGXGQIXXVGVTAXALVMIFFFVMPTLXGGFGXXLXPLXVGAPXMAXPRLXNMSF 92


>UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6;
           Digenea|Rep: Cytochrome c oxidase subunit I -
           Echinostoma hortense
          Length = 154

 Score = 44.0 bits (99), Expect = 0.003
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +2

Query: 584 FFGHPEVYILILPGFGIISH 643
           FFGHPEVY+LILP FGI+SH
Sbjct: 1   FFGHPEVYVLILPVFGIVSH 20


>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
           Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
           Haloarcula marismortui (Halobacterium marismortui)
          Length = 854

 Score = 43.2 bits (97), Expect = 0.006
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +2

Query: 536 DPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640
           D    G  +L+ HLF FFGHPEVYI+  P  G+++
Sbjct: 243 DADNPGASLLWAHLFWFFGHPEVYIVFFPALGVMA 277


>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
           Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
           subunit I - Tetragona dorsalis ziegleri
          Length = 111

 Score = 42.3 bits (95), Expect = 0.010
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 619
           +++DRN N  FF   GG  PIL+Q++   FGH +V  LIL
Sbjct: 42  LLSDRNFNKFFFILIGGEYPILHQYMLWLFGHTDVLFLIL 81


>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
           n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
           polypeptide I/III - Picrophilus torridus
          Length = 841

 Score = 41.9 bits (94), Expect = 0.013
 Identities = 15/27 (55%), Positives = 23/27 (85%)
 Frame = +2

Query: 551 GDPILYQHLF*FFGHPEVYILILPGFG 631
           G  +++++LF +FGHPEVY+L+LPG G
Sbjct: 255 GGALMWENLFWYFGHPEVYLLLLPGTG 281


>UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1;
           Harmonia axyridis|Rep: Cytochrome c oxidase subunit 2 -
           Harmonia axyridis (Multicolored Asian lady beetle)
          Length = 193

 Score = 40.7 bits (91), Expect = 0.029
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = +1

Query: 571 TFILIFWTS*SLYFNFTRIWYNFSY 645
           + ++IFW+S SLYFN   IWYNF Y
Sbjct: 2   SLVMIFWSSSSLYFNSPSIWYNFPY 26


>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
           oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
           Sub-unit I of an aa3-type cytochrome oxidase -
           Thiobacillus ferrooxidans (Acidithiobacillus
           ferrooxidans)
          Length = 627

 Score = 36.3 bits (80), Expect = 0.63
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = +2

Query: 527 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 634
           S F     G P+ Y   F F  HPEVY+ ILP F I
Sbjct: 311 SHFYTGPTGHPLAYLDQFWFLFHPEVYVFILPAFAI 346


>UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4;
           Chloroflexaceae|Rep: Cytochrome c oxidase, subunit I -
           Roseiflexus sp. RS-1
          Length = 561

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 548 GGDPILYQHLF*FFGHPEVYILILPGF 628
           G DP+L + LF F GHP VY  +LP +
Sbjct: 224 GTDPVLARTLFWFTGHPIVYFWLLPAY 250


>UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2;
           Bruchidius|Rep: Cytochrome c oxidase subunit I -
           Bruchidius aff. varius GLK-2003
          Length = 339

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +2

Query: 599 EVYILILPGFGIISH 643
           EVYILILPGFG+ISH
Sbjct: 155 EVYILILPGFGMISH 169


>UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1;
           Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
           Aquifex aeolicus
          Length = 592

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 554 DPILYQHLF*FFGHPEVYILILPGF 628
           +P+L + LF FFGHP VY  +LP +
Sbjct: 209 NPLLARTLFWFFGHPVVYFWLLPAY 233


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 476,373,973
Number of Sequences: 1657284
Number of extensions: 8146212
Number of successful extensions: 15946
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 14920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15753
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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