BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1063 (645 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 101 2e-20 UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 100 3e-20 UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 99 5e-20 UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 99 5e-20 UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 99 5e-20 UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 100 6e-20 UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 97 3e-19 UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 95 1e-18 UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 92 1e-17 UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 91 2e-17 UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 91 2e-17 UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 91 2e-17 UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 91 3e-17 UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 91 3e-17 UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 90 4e-17 UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 90 5e-17 UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 89 8e-17 UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 89 1e-16 UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 88 1e-16 UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 88 1e-16 UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 86 8e-16 UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 84 3e-15 UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 83 4e-15 UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 80 5e-14 UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 80 5e-14 UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 79 7e-14 UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 79 9e-14 UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 79 1e-13 UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 78 2e-13 UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 77 5e-13 UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 75 2e-12 UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 74 3e-12 UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 74 3e-12 UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 73 5e-12 UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En... 71 2e-11 UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 71 3e-11 UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 70 4e-11 UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 69 7e-11 UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 69 1e-10 UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 69 1e-10 UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 68 2e-10 UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 68 2e-10 UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 68 2e-10 UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 67 4e-10 UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 66 5e-10 UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 66 5e-10 UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 66 5e-10 UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 66 7e-10 UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 65 2e-09 UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 64 2e-09 UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 64 3e-09 UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 64 3e-09 UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 64 3e-09 UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 64 3e-09 UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 63 5e-09 UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 63 6e-09 UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 62 1e-08 UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 62 1e-08 UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 62 1e-08 UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 61 3e-08 UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 60 3e-08 UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 60 4e-08 UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 60 4e-08 UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 59 8e-08 UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 59 1e-07 UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 59 1e-07 UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 59 1e-07 UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 59 1e-07 UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 59 1e-07 UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 58 1e-07 UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 58 2e-07 UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 58 2e-07 UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 58 2e-07 UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 56 6e-07 UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 56 6e-07 UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 56 6e-07 UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 55 1e-06 UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 55 1e-06 UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 55 2e-06 UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 55 2e-06 UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 55 2e-06 UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 54 3e-06 UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 53 5e-06 UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 53 7e-06 UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 53 7e-06 UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 53 7e-06 UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 52 9e-06 UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 51 3e-05 UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 50 4e-05 UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 50 4e-05 UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 50 6e-05 UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 48 2e-04 UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ... 47 3e-04 UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 46 6e-04 UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di... 44 0.003 UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 43 0.006 UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 42 0.010 UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 42 0.013 UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1; Ha... 41 0.029 UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox... 36 0.63 UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4; C... 34 3.4 UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2; Br... 34 3.4 UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 33 4.5 >UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio (Zebrafish) (Brachydanio rerio) Length = 516 Score = 101 bits (241), Expect = 2e-20 Identities = 43/48 (89%), Positives = 46/48 (95%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643 ++ DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIISH Sbjct: 209 LLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISH 256 Score = 75.4 bits (177), Expect = 1e-12 Identities = 39/82 (47%), Positives = 46/82 (56%) Frame = +2 Query: 8 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 187 PG+L+GDDQIYN IVTAHA N LVPL++GAPD+AFPR+NN+ F Sbjct: 44 PGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPDMAFPRMNNMSFW 103 Query: 188 XXXXXXXXXXXXXIVENGAGTG 253 VE GAGTG Sbjct: 104 LLPPSFLLLLASSGVEAGAGTG 125 Score = 62.1 bits (144), Expect = 1e-08 Identities = 34/66 (51%), Positives = 38/66 (57%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPL+ N+AH G SVDL IFSLHLAG+SS S Q PLFV Sbjct: 127 TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVW 186 Query: 436 AVGITA 453 AV +TA Sbjct: 187 AVLVTA 192 >UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742; Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia melitaearum (Parasitoid wasp) Length = 499 Score = 100 bits (239), Expect = 3e-20 Identities = 42/48 (87%), Positives = 46/48 (95%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643 ++ DRN+NTSFFDP+GGGDPILYQHLF FFGHPEVYILILPGFGIISH Sbjct: 193 LLTDRNMNTSFFDPSGGGDPILYQHLFWFFGHPEVYILILPGFGIISH 240 Score = 72.9 bits (171), Expect = 6e-12 Identities = 38/94 (40%), Positives = 49/94 (52%) Frame = +2 Query: 2 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181 G PGSLIG+DQIYN+IVT+HA N L+PL+LG+PD++FPR+NN+ Sbjct: 26 GMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFPRMNNMS 85 Query: 182 FXXXXXXXXXXXXXXIVENGAGTG*QFTPHFHLI 283 F + G GTG P LI Sbjct: 86 FWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLI 119 Score = 52.4 bits (120), Expect = 9e-06 Identities = 30/66 (45%), Positives = 35/66 (53%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPLS + H G SVDL IFSLHLAG SS + D++ LF Sbjct: 111 TVYPPLSLILGHGGMSVDLGIFSLHLAGASSIMGAVNFITTILNMRSNLFNMDKMSLFSW 170 Query: 436 AVGITA 453 +V ITA Sbjct: 171 SVFITA 176 >UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus rubiginosus Length = 504 Score = 99 bits (238), Expect = 5e-20 Identities = 42/48 (87%), Positives = 46/48 (95%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643 ++ DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISH Sbjct: 210 LLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISH 257 Score = 79.0 bits (186), Expect = 9e-14 Identities = 41/84 (48%), Positives = 48/84 (57%) Frame = +2 Query: 2 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181 G PG+L+GDDQIYN IVTAHA N LVPL++GAPD+AFPR+NN+ Sbjct: 43 GQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMS 102 Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253 F VE GAGTG Sbjct: 103 FWLXPPSFLLLLASSTVEAGAGTG 126 Score = 63.3 bits (147), Expect = 5e-09 Identities = 36/66 (54%), Positives = 39/66 (59%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPL+ N+AH G SVDLAIFSLHLAGISS S Q PLFV Sbjct: 128 TVYPPLAGNLAHAGASVDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLFVW 187 Query: 436 AVGITA 453 +V ITA Sbjct: 188 SVLITA 193 >UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; Eukaryota|Rep: Cytochrome c oxidase subunit I - Ophisurus macrorhynchos Length = 546 Score = 99 bits (238), Expect = 5e-20 Identities = 42/48 (87%), Positives = 46/48 (95%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643 ++ DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISH Sbjct: 209 LLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISH 256 Score = 75.4 bits (177), Expect = 1e-12 Identities = 39/82 (47%), Positives = 46/82 (56%) Frame = +2 Query: 8 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 187 PG+L+GDDQIYN IVTAHA N LVPL++GAPD+AFPR+NN+ F Sbjct: 44 PGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFW 103 Query: 188 XXXXXXXXXXXXXIVENGAGTG 253 VE GAGTG Sbjct: 104 LLPPSFLLLLASSGVEAGAGTG 125 Score = 59.7 bits (138), Expect = 6e-08 Identities = 32/66 (48%), Positives = 38/66 (57%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPL+ N+AH G SVDL IFSLHLAG+SS + Q PLFV Sbjct: 127 TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVW 186 Query: 436 AVGITA 453 +V +TA Sbjct: 187 SVLVTA 192 >UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498; root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens (Human) Length = 513 Score = 99 bits (238), Expect = 5e-20 Identities = 42/48 (87%), Positives = 46/48 (95%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643 ++ DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISH Sbjct: 209 LLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISH 256 Score = 75.8 bits (178), Expect = 8e-13 Identities = 38/84 (45%), Positives = 47/84 (55%) Frame = +2 Query: 2 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181 G PG+L+G+D IYN IVTAHA N LVPL++GAPD+AFPR+NN+ Sbjct: 42 GQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMS 101 Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253 F +VE GAGTG Sbjct: 102 FWLLPPSLLLLLASAMVEAGAGTG 125 Score = 57.2 bits (132), Expect = 3e-07 Identities = 32/66 (48%), Positives = 37/66 (56%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPL+ N +H G SVDL IFSLHLAG+SS + Q PLFV Sbjct: 127 TVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVW 186 Query: 436 AVGITA 453 +V ITA Sbjct: 187 SVLITA 192 >UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931; cellular organisms|Rep: Cytochrome c oxidase subunit 1 - Arabidopsis thaliana (Mouse-ear cress) Length = 527 Score = 99.5 bits (237), Expect = 6e-20 Identities = 42/48 (87%), Positives = 45/48 (93%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643 ++ DRN NT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIISH Sbjct: 212 LLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISH 259 Score = 61.7 bits (143), Expect = 1e-08 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Frame = +2 Query: 8 PGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181 PG I G+ Q+YN ++TAHA N VP+++GAPD+AFPR+NNI Sbjct: 45 PGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDMAFPRLNNIS 104 Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253 F +VE G+GTG Sbjct: 105 FWLLPPSLLLLLSSALVEVGSGTG 128 Score = 58.4 bits (135), Expect = 1e-07 Identities = 31/67 (46%), Positives = 39/67 (58%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPLS +H G +VDLAIFSLHL+G+SS + +LPLFV Sbjct: 130 TVYPPLSGITSHSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVW 189 Query: 436 AVGITAF 456 +V +TAF Sbjct: 190 SVLVTAF 196 >UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8 precursor [Contains: Truncated non-functional cytochrome oxidase 1; Intron-encoded endonuclease aI8 (EC 3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded endonuclease aI8 precursor [Contains: Truncated non-functional cytochrome oxidase 1; Intron-encoded endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut fungus) Length = 645 Score = 97.1 bits (231), Expect = 3e-19 Identities = 39/48 (81%), Positives = 45/48 (93%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643 ++ DRN NTSF+DPAGGGDPILYQHLF FFGHPEVYILI+PGFG++SH Sbjct: 209 LLTDRNFNTSFYDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGMVSH 256 Score = 66.5 bits (155), Expect = 5e-10 Identities = 34/79 (43%), Positives = 41/79 (51%) Frame = +2 Query: 17 LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 196 L GD Q+YN I+TAHA N LVP+++GAPD+AFPR+NNI F Sbjct: 47 LNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLP 106 Query: 197 XXXXXXXXXXIVENGAGTG 253 VE GAGTG Sbjct: 107 PSLILLLASAFVEQGAGTG 125 Score = 58.0 bits (134), Expect = 2e-07 Identities = 32/66 (48%), Positives = 38/66 (57%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPLS +H G SVDLAIFSLHL+GISS + +LPLFV Sbjct: 127 TVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVW 186 Query: 436 AVGITA 453 A+ +TA Sbjct: 187 AIFVTA 192 >UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; cellular organisms|Rep: Cytochrome c oxidase subunit 1 - Chondrus crispus (Carragheen) Length = 532 Score = 95.1 bits (226), Expect = 1e-18 Identities = 40/48 (83%), Positives = 44/48 (91%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643 ++ DRN NTSFFD +GGGDPILYQHLF FFGHPEVYILILPGFG+ISH Sbjct: 217 LLTDRNFNTSFFDASGGGDPILYQHLFWFFGHPEVYILILPGFGMISH 264 Score = 63.7 bits (148), Expect = 4e-09 Identities = 31/79 (39%), Positives = 42/79 (53%) Frame = +2 Query: 17 LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 196 L+G+ QIYN ++TAHA N LVP+++G+PD+AFPR+NNI F Sbjct: 55 LLGNHQIYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAFPRLNNISFWLLP 114 Query: 197 XXXXXXXXXXIVENGAGTG 253 +VE G GTG Sbjct: 115 PSLCLLLMSALVEVGVGTG 133 Score = 56.0 bits (129), Expect = 7e-07 Identities = 30/67 (44%), Positives = 39/67 (58%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPLSS +H G +VDLAIFSLH++G SS S ++PLFV Sbjct: 135 TVYPPLSSIQSHSGGAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLFVW 194 Query: 436 AVGITAF 456 ++ +TAF Sbjct: 195 SILVTAF 201 >UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep: Cytochrome oxidase subunits 1 and 2 polyprotein - Phaeosphaeria nodorum SN15 Length = 789 Score = 91.9 bits (218), Expect = 1e-17 Identities = 39/47 (82%), Positives = 43/47 (91%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 ++ DRN NTSFF+ AGGGDPILYQHLF FFGHPEVYILI+PGFGIIS Sbjct: 210 VLTDRNFNTSFFEVAGGGDPILYQHLFWFFGHPEVYILIIPGFGIIS 256 Score = 60.1 bits (139), Expect = 4e-08 Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Frame = +2 Query: 8 PG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184 PG I D+Q+YN+I+TAHA N L+PL LG PD+ FPR+NNI + Sbjct: 44 PGVQYIADNQLYNSIITAHAIIMIFFMVMPALIGGFGNFLLPLGLGGPDMGFPRLNNISY 103 Query: 185 XXXXXXXXXXXXXXIVENGAGTG 253 +ENG GTG Sbjct: 104 LLLIPSIVLFLFAGGIENGVGTG 126 Score = 49.6 bits (113), Expect = 6e-05 Identities = 30/66 (45%), Positives = 34/66 (51%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 T+YPPLS +H G SVDLAIF LHL+GISS +L LF Sbjct: 128 TLYPPLSGIQSHSGPSVDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAW 187 Query: 436 AVGITA 453 AV ITA Sbjct: 188 AVVITA 193 >UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 - Naegleria gruberi Length = 633 Score = 91.5 bits (217), Expect = 2e-17 Identities = 37/48 (77%), Positives = 43/48 (89%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643 ++ DRN NTSF+DP GGGD +LYQHLF FFGHPEVYILILPGFG++SH Sbjct: 213 LLFDRNFNTSFYDPVGGGDVVLYQHLFWFFGHPEVYILILPGFGLVSH 260 Score = 53.2 bits (122), Expect = 5e-06 Identities = 30/67 (44%), Positives = 34/67 (50%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPLSS +H G SVDL IFS HL GI S LPLFV Sbjct: 131 TVYPPLSSLQSHSGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLFVW 190 Query: 436 AVGITAF 456 +V +T+F Sbjct: 191 SVAVTSF 197 Score = 51.6 bits (118), Expect = 2e-05 Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 2/107 (1%) Frame = +2 Query: 17 LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 196 L G+ YN I T H N VP+++GAPD++FPR+NN F Sbjct: 51 LFGEYHFYNMITTVHGVLMLFVVVMPILFGGFGNYFVPILIGAPDMSFPRLNNFSFWLLP 110 Query: 197 XXXXXXXXXXIVENGAGTG*Q-FTPHFHLISHIEEDP*ILLF-FHYI 331 E G GTG + P L SH +++F FH + Sbjct: 111 GAILLAVLATYSEGGPGTGWTVYPPLSSLQSHSGASVDLMIFSFHLV 157 >UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Periclimenes thermohydrophilus|Rep: Cytochrome oxidase subunit I - Periclimenes thermohydrophilus Length = 217 Score = 91.5 bits (217), Expect = 2e-17 Identities = 48/89 (53%), Positives = 58/89 (65%) Frame = -1 Query: 267 GVNCYPVPAPFSTILLEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXX 88 G +PVP P STI L + ++EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP Sbjct: 105 GYTVHPVPTPLSTIPLNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGM 164 Query: 87 XXXXXXXKACAVTIVL*I*SSPINDPGFP 1 KA AVT+ L I S PI PG P Sbjct: 165 TMKKIITKAWAVTMTL-IWSFPIKLPGCP 192 Score = 46.4 bits (105), Expect = 6e-04 Identities = 31/68 (45%), Positives = 34/68 (50%) Frame = -2 Query: 458 KNAVIPTAHTNKGN*SNDILFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAIL 279 K AV T TN G S I +R I+E PAKC+EKI STD P CAI Sbjct: 41 KMAVSNTDQTNSGMRSMVIPADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIP 100 Query: 278 DESGG*TV 255 SGG TV Sbjct: 101 LASGGYTV 108 Score = 43.6 bits (98), Expect = 0.004 Identities = 19/25 (76%), Positives = 22/25 (88%) Frame = -1 Query: 579 NKC*YKIGSPPPAGSKNDVFKFRSL 505 NKC + IGSPPPAGSK +VFKFRS+ Sbjct: 1 NKC-WSIGSPPPAGSKKEVFKFRSV 24 >UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha precursor (DNA endonuclease I-SceIV) [Contains: Truncated non-functional cytochrome oxidase 1; DNA endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep: Intron-encoded DNA endonuclease aI5 alpha precursor (DNA endonuclease I-SceIV) [Contains: Truncated non-functional cytochrome oxidase 1; DNA endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I- SceIV)] - Saccharomyces cerevisiae (Baker's yeast) Length = 630 Score = 91.1 bits (216), Expect = 2e-17 Identities = 38/48 (79%), Positives = 44/48 (91%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643 ++ DRN NTSFF+ +GGGDPILY+HLF FFGHPEVYILI+PGFGIISH Sbjct: 210 LLLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILIIPGFGIISH 257 Score = 58.8 bits (136), Expect = 1e-07 Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Frame = +2 Query: 8 PGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181 PGS L G+ Q++N +V HA N L+PL++GA D AFPRINNI Sbjct: 43 PGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIA 102 Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253 F +VE+GAGTG Sbjct: 103 FWVLPMGLVCLVTSTLVESGAGTG 126 Score = 58.4 bits (135), Expect = 1e-07 Identities = 33/67 (49%), Positives = 38/67 (56%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPLSS AH G SVDLAIF+LHL ISS + +LPLFV Sbjct: 128 TVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVW 187 Query: 436 AVGITAF 456 ++ ITAF Sbjct: 188 SIFITAF 194 >UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular organisms|Rep: Cytochrome-c oxidase - Jannaschia sp. (strain CCS1) Length = 628 Score = 90.6 bits (215), Expect = 3e-17 Identities = 36/48 (75%), Positives = 43/48 (89%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643 ++ DRN T+FFDPAGGGDPIL+QH+F FFGHPEVYI+ILP FG+ISH Sbjct: 315 LLTDRNFGTTFFDPAGGGDPILFQHIFWFFGHPEVYIVILPAFGVISH 362 Score = 50.8 bits (116), Expect = 3e-05 Identities = 23/81 (28%), Positives = 37/81 (45%) Frame = +2 Query: 26 DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXX 205 D ++N ++T H N +PL++GAPD+AFPR+NN+ + Sbjct: 156 DGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFPRLNNLSYWMYVAGT 215 Query: 206 XXXXXXXIVENGAGTG*QFTP 268 +++ GAG G F P Sbjct: 216 CLAFCSVMIDGGAGPGWTFYP 236 Score = 41.5 bits (93), Expect = 0.017 Identities = 21/67 (31%), Positives = 34/67 (50%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 T YPP+S+ R+VD AIF++H++G SS + ++PLF Sbjct: 233 TFYPPISAQGVETSRAVDFAIFAVHVSGASSILGSINFITTFLNMRAPGMTLHKVPLFAW 292 Query: 436 AVGITAF 456 +V +TA+ Sbjct: 293 SVFVTAW 299 >UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; Bilateria|Rep: Cytochrome c oxidase subunit I - Schistosoma mansoni (Blood fluke) Length = 609 Score = 90.6 bits (215), Expect = 3e-17 Identities = 36/48 (75%), Positives = 44/48 (91%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643 ++ DRN T+FF+P+GGGDPIL+QHLF FFGHPEVY+LILPGFGI+SH Sbjct: 299 LLFDRNFGTAFFEPSGGGDPILFQHLFWFFGHPEVYVLILPGFGIVSH 346 Score = 33.9 bits (74), Expect = 3.4 Identities = 18/31 (58%), Positives = 21/31 (67%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 348 T+YPPLS G VD +FSLHLAG+SS Sbjct: 223 TLYPPLSI-WEGSGFGVDYLMFSLHLAGVSS 252 >UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I - Trichoderma reesei (Hypocrea jecorina) Length = 635 Score = 90.2 bits (214), Expect = 4e-17 Identities = 38/47 (80%), Positives = 43/47 (91%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 ++ DRN NTSFF+ AGGGDPIL+QHLF FFGHPEVYILI+PGFGIIS Sbjct: 235 VLTDRNFNTSFFEVAGGGDPILFQHLFWFFGHPEVYILIIPGFGIIS 281 Score = 63.3 bits (147), Expect = 5e-09 Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Frame = +2 Query: 8 PG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184 PG I ++Q+YN+I+TAHA N L+PL++G PD+AFPR+NNI F Sbjct: 72 PGVQFIANNQLYNSIITAHAILMIFFMVMPALIGGFGNFLMPLMIGGPDMAFPRLNNISF 131 Query: 185 XXXXXXXXXXXXXXIVENGAGTG 253 I+E G GTG Sbjct: 132 WLLPPSLLLLVFSAIIEGGVGTG 154 Score = 45.2 bits (102), Expect = 0.001 Identities = 20/29 (68%), Positives = 24/29 (82%) Frame = +1 Query: 262 YPPLSSNIAHRGRSVDLAIFSLHLAGISS 348 YPPLS +H G SVDLAIF+LHL+G+SS Sbjct: 162 YPPLSGLQSHSGPSVDLAIFALHLSGVSS 190 >UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|Rep: Endonuclease - Saccharomyces servazzii (Yeast) Length = 675 Score = 89.8 bits (213), Expect = 5e-17 Identities = 37/48 (77%), Positives = 42/48 (87%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643 ++ DRN NTSFF+ AGGGDPI YQH F FFGHPEVYILI+PGFGI+SH Sbjct: 210 LLMDRNFNTSFFEVAGGGDPIFYQHAFWFFGHPEVYILIIPGFGIVSH 257 Score = 61.3 bits (142), Expect = 2e-08 Identities = 35/67 (52%), Positives = 38/67 (56%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPLSS AH G SVDLAIFSLHL ISS S ++PLFV Sbjct: 128 TVYPPLSSIQAHSGPSVDLAIFSLHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLFVW 187 Query: 436 AVGITAF 456 A+ ITAF Sbjct: 188 AIFITAF 194 Score = 55.2 bits (127), Expect = 1e-06 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Frame = +2 Query: 8 PGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181 PGS L G+ Q++N +V HA N ++PL++GA D++FPRIN+I Sbjct: 43 PGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGGFGNYMLPLMIGATDMSFPRINSIG 102 Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253 F +VE+GAGTG Sbjct: 103 FWLLPMGLVCLVTSTLVESGAGTG 126 >UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; Bilateria|Rep: Cytochrome c oxidase subunit I - Samia cynthia ricini (Indian eri silkmoth) Length = 510 Score = 89.0 bits (211), Expect = 8e-17 Identities = 46/84 (54%), Positives = 50/84 (59%) Frame = +2 Query: 2 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181 G PGSLIGDDQIYNTIVTAHA N LVPL+LGAPD+AFPR+NN+ Sbjct: 39 GTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMS 98 Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253 F IVENGAGTG Sbjct: 99 FWLLPPSLTLLISSSIVENGAGTG 122 Score = 82.6 bits (195), Expect = 7e-15 Identities = 44/67 (65%), Positives = 45/67 (67%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPLSSNIAH G SVDLAIFSLHLAGISS SFDQ+PLFV Sbjct: 124 TVYPPLSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPLFVW 183 Query: 436 AVGITAF 456 AVGITAF Sbjct: 184 AVGITAF 190 Score = 72.1 bits (169), Expect = 1e-11 Identities = 29/35 (82%), Positives = 33/35 (94%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 604 ++ DRNLNTSFFDPAGGGDPILYQHLF FFGHP++ Sbjct: 206 LLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPKL 240 >UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; Panarthropoda|Rep: Cytochrome c oxidase subunit I - Pagyris cymothoe Length = 487 Score = 88.6 bits (210), Expect = 1e-16 Identities = 45/84 (53%), Positives = 50/84 (59%) Frame = +2 Query: 2 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181 G PGSLIGDDQIYNTIVTAHA N L+PL+LGAPD+AFPR+NN+ Sbjct: 15 GTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRMNNMS 74 Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253 F IVENGAGTG Sbjct: 75 FWLLPPSLILLISSSIVENGAGTG 98 Score = 82.6 bits (195), Expect = 7e-15 Identities = 35/39 (89%), Positives = 37/39 (94%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 616 ++ DRNLNTSFFDPAGGGDPILYQHLF FFGHPEVYILI Sbjct: 182 LLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI 220 Score = 79.8 bits (188), Expect = 5e-14 Identities = 42/66 (63%), Positives = 44/66 (66%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPLSSNIAH G SVDLAIFSLHLAGISS SFDQ+PLF+ Sbjct: 100 TVYPPLSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRINKMSFDQMPLFIW 159 Query: 436 AVGITA 453 AVGITA Sbjct: 160 AVGITA 165 >UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Echinoida|Rep: Cytochrome c oxidase subunit I - Echinometra oblonga Length = 386 Score = 88.2 bits (209), Expect = 1e-16 Identities = 39/54 (72%), Positives = 42/54 (77%) Frame = +2 Query: 482 SWSYYNIINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643 SW N N T+FFDPAGGGD IL+QHLF FFGHPEVYILILPGFG+ISH Sbjct: 180 SWGNNNASYSSNYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPGFGMISH 233 >UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; Eukaryota|Rep: Cytochrome c oxidase subunit I - Paracoccidioides brasiliensis Length = 710 Score = 88.2 bits (209), Expect = 1e-16 Identities = 38/47 (80%), Positives = 43/47 (91%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 ++ DRNLNTSF++ AGGGD ILYQHLF FFGHPEVYILI+PGFGIIS Sbjct: 236 LLTDRNLNTSFYELAGGGDAILYQHLFWFFGHPEVYILIIPGFGIIS 282 Score = 61.7 bits (143), Expect = 1e-08 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Frame = +2 Query: 8 PG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184 PG I D+Q+YN+I+T+H N L+P+++G PD+AFPR+NN+ + Sbjct: 70 PGIQYIEDNQLYNSIITSHGVIMIFFMVMPALIGGFGNFLLPILIGGPDMAFPRLNNVSY 129 Query: 185 XXXXXXXXXXXXXXIVENGAGTG 253 I+ENG GTG Sbjct: 130 WLLIPSLFLFVFAAIIENGVGTG 152 Score = 44.4 bits (100), Expect = 0.002 Identities = 27/66 (40%), Positives = 31/66 (46%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 T+YPPLS +H VDL IF LHL+GISS +L LF Sbjct: 154 TLYPPLSGIQSHSSMGVDLGIFGLHLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGW 213 Query: 436 AVGITA 453 AV ITA Sbjct: 214 AVVITA 219 >UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteobacteria|Rep: Cytochrome-c oxidase - Sphingomonas sp. SKA58 Length = 556 Score = 85.8 bits (203), Expect = 8e-16 Identities = 36/47 (76%), Positives = 41/47 (87%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 ++ DRN T+F+D AGGGDP LYQHLF FFGHPEVYI+ILPGFGIIS Sbjct: 252 LLTDRNFGTTFYDAAGGGDPELYQHLFWFFGHPEVYIMILPGFGIIS 298 Score = 47.6 bits (108), Expect = 3e-04 Identities = 23/73 (31%), Positives = 32/73 (43%) Frame = +2 Query: 35 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 214 ++N ++TAH N VP+++GAPD+AFPR+NNI F Sbjct: 93 LWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALL 152 Query: 215 XXXXIVENGAGTG 253 V G G G Sbjct: 153 LGSTFVPGGTGNG 165 Score = 44.0 bits (99), Expect = 0.003 Identities = 26/67 (38%), Positives = 36/67 (53%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVY PLS++ G +VD+AI SLH+AG SS + ++PLFV Sbjct: 171 TVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTILNMRAPGMTLHKMPLFVW 229 Query: 436 AVGITAF 456 +V +TAF Sbjct: 230 SVLVTAF 236 >UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula unguis Length = 573 Score = 83.8 bits (198), Expect = 3e-15 Identities = 35/48 (72%), Positives = 42/48 (87%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643 ++ DR+ +TSF+ P GGGDPIL+QHLF FFGHPEVYILILP FG+ISH Sbjct: 212 LLLDRHFSTSFYYPEGGGDPILWQHLFWFFGHPEVYILILPAFGVISH 259 Score = 41.9 bits (94), Expect = 0.013 Identities = 18/31 (58%), Positives = 25/31 (80%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 348 T+YPPLS++ G +DLA+FSLH+AG+SS Sbjct: 129 TMYPPLSNSEFMDGLPIDLAVFSLHMAGMSS 159 Score = 33.5 bits (73), Expect = 4.5 Identities = 15/58 (25%), Positives = 28/58 (48%) Frame = +2 Query: 5 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNI 178 +PG + +Y++I+T HA N +PL++ D++ PR+NN+ Sbjct: 45 HPGEWLQVGYMYHSIMTMHAFMMIFFFVMPTSIGGLGNWFIPLMIKIKDLSMPRLNNL 102 >UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; Alveolata|Rep: Cytochrome c oxidase subunit 1 - Plasmodium falciparum Length = 476 Score = 83.4 bits (197), Expect = 4e-15 Identities = 35/48 (72%), Positives = 40/48 (83%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643 +++D + NT FFDP GDPILYQHLF FFGHPEVYILILP FG+ISH Sbjct: 215 LLSDLHFNTLFFDPTFAGDPILYQHLFWFFGHPEVYILILPAFGVISH 262 Score = 38.7 bits (86), Expect = 0.12 Identities = 20/73 (27%), Positives = 29/73 (39%) Frame = +2 Query: 35 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 214 +YN I T H N +P++ G+P++A+PRIN+I Sbjct: 58 LYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLV 117 Query: 215 XXXXIVENGAGTG 253 E G GTG Sbjct: 118 ILSTAAEFGGGTG 130 >UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast) Length = 763 Score = 79.8 bits (188), Expect = 5e-14 Identities = 32/47 (68%), Positives = 41/47 (87%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 ++ DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+P FG++S Sbjct: 227 LLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVPVFGVVS 273 Score = 54.8 bits (126), Expect = 2e-06 Identities = 28/66 (42%), Positives = 39/66 (59%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 T+YPPL+S +H G S+D+AIF+LHL+G+SS + +LPLFV Sbjct: 145 TLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVW 204 Query: 436 AVGITA 453 +V ITA Sbjct: 205 SVLITA 210 Score = 53.2 bits (122), Expect = 5e-06 Identities = 27/83 (32%), Positives = 40/83 (48%) Frame = +2 Query: 5 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184 NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120 Query: 185 XXXXXXXXXXXXXXIVENGAGTG 253 +++ G G+G Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSG 143 >UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast) Length = 676 Score = 79.8 bits (188), Expect = 5e-14 Identities = 32/47 (68%), Positives = 41/47 (87%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 ++ DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+P FG++S Sbjct: 227 LLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVPVFGVVS 273 Score = 54.8 bits (126), Expect = 2e-06 Identities = 28/66 (42%), Positives = 39/66 (59%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 T+YPPL+S +H G S+D+AIF+LHL+G+SS + +LPLFV Sbjct: 145 TLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVW 204 Query: 436 AVGITA 453 +V ITA Sbjct: 205 SVLITA 210 Score = 53.2 bits (122), Expect = 5e-06 Identities = 27/83 (32%), Positives = 40/83 (48%) Frame = +2 Query: 5 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184 NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120 Query: 185 XXXXXXXXXXXXXXIVENGAGTG 253 +++ G G+G Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSG 143 >UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Theileria|Rep: Cytochrome c oxidase subunit 1 - Theileria parva Length = 481 Score = 79.4 bits (187), Expect = 7e-14 Identities = 33/44 (75%), Positives = 38/44 (86%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 DR+ NT FF+ + GDP+LYQHLF FFGHPEVYI+ILPGFGIIS Sbjct: 218 DRHYNTMFFESSNSGDPVLYQHLFWFFGHPEVYIMILPGFGIIS 261 Score = 33.9 bits (74), Expect = 3.4 Identities = 19/74 (25%), Positives = 28/74 (37%) Frame = +2 Query: 32 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 211 +IYN + T H N L P++LG D+ +PR+N Sbjct: 60 EIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVL 119 Query: 212 XXXXXIVENGAGTG 253 +E G+GTG Sbjct: 120 VVSSIYLEIGSGTG 133 >UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; Nematoda|Rep: Cytochrome c oxidase subunit I - Onchocerca volvulus Length = 548 Score = 79.0 bits (186), Expect = 9e-14 Identities = 33/47 (70%), Positives = 40/47 (85%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 ++ DRN NTSF+D GG+P+LYQHLF FFGHPEVY++ILP FGIIS Sbjct: 219 LLLDRNFNTSFYDTKKGGNPLLYQHLFWFFGHPEVYVIILPVFGIIS 265 Score = 48.0 bits (109), Expect = 2e-04 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 2/90 (2%) Frame = +2 Query: 5 NPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNI 178 +PG G Q+YN+++T H N ++PL+LGAP++AFPR+N + Sbjct: 52 SPGGHLFFGSGQVYNSVLTMHGVLMIFFLVMPILIGGFGNWMLPLMLGAPEMAFPRVNAL 111 Query: 179 RFXXXXXXXXXXXXXXIVENGAGTG*QFTP 268 F + G G+ F P Sbjct: 112 SFWFTFVALLMVYQSFFIGGGPGSSWTFYP 141 >UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; Bilateria|Rep: Cytochrome c oxidase subunit I - Homalopoma maculosa Length = 219 Score = 78.6 bits (185), Expect = 1e-13 Identities = 39/84 (46%), Positives = 47/84 (55%) Frame = +2 Query: 2 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181 G PGS IG+DQ+YN +VTAHA N LVPL+LGAPD+AFPR+NN+ Sbjct: 25 GQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNNMS 84 Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253 F VE+GAGTG Sbjct: 85 FWFLPPSLSLLLMSAAVESGAGTG 108 Score = 59.7 bits (138), Expect = 6e-08 Identities = 33/66 (50%), Positives = 37/66 (56%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPLS N AH G SVDLAIFSLHLAG+SS + + LFV Sbjct: 110 TVYPPLSGNTAHAGPSVDLAIFSLHLAGVSSILGAVNFITTVINMRWGAMKIELVSLFVW 169 Query: 436 AVGITA 453 +V ITA Sbjct: 170 SVKITA 175 Score = 58.0 bits (134), Expect = 2e-07 Identities = 23/27 (85%), Positives = 25/27 (92%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF 580 ++ DRN NTSFFDPAGGGDPILYQHLF Sbjct: 192 LLTDRNFNTSFFDPAGGGDPILYQHLF 218 >UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eukaryota|Rep: Cytochrome c oxidase subunit 1 - Leishmania tarentolae (Sauroleishmania tarentolae) Length = 549 Score = 78.2 bits (184), Expect = 2e-13 Identities = 33/47 (70%), Positives = 40/47 (85%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 I+ DRN NTSF+D GGGD IL+QH+F FFGHPEVYI++LP FG+IS Sbjct: 212 ILCDRNFNTSFYDVVGGGDLILFQHIFWFFGHPEVYIILLPVFGLIS 258 Score = 50.8 bits (116), Expect = 3e-05 Identities = 24/81 (29%), Positives = 34/81 (41%) Frame = +2 Query: 11 GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXX 190 G L GD Q YN ++T+H N +P++ G PD+ FPR+NN+ F Sbjct: 48 GILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWM 107 Query: 191 XXXXXXXXXXXXIVENGAGTG 253 + E G G G Sbjct: 108 YLAGFGCVVNGFLTEEGMGVG 128 >UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I - Placozoan sp. BZ2423 Length = 498 Score = 76.6 bits (180), Expect = 5e-13 Identities = 37/83 (44%), Positives = 46/83 (55%) Frame = +2 Query: 5 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184 +PGS++GDD +YN IVTAHA N VPL++GAPD+AFPR+NNI F Sbjct: 44 SPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWFVPLMIGAPDMAFPRLNNISF 103 Query: 185 XXXXXXXXXXXXXXIVENGAGTG 253 +VE GAGTG Sbjct: 104 WLLPPALFLLLGSSLVEQGAGTG 126 Score = 59.3 bits (137), Expect = 8e-08 Identities = 24/31 (77%), Positives = 27/31 (87%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFG 592 ++ DR NT+FFDPAGGGDPILYQHLF FFG Sbjct: 210 LLTDRYFNTTFFDPAGGGDPILYQHLFWFFG 240 Score = 58.0 bits (134), Expect = 2e-07 Identities = 32/66 (48%), Positives = 39/66 (59%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPL+S AH G SVD+AIFSLHLAG+SS + ++PLFV Sbjct: 128 TVYPPLASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVW 187 Query: 436 AVGITA 453 +V ITA Sbjct: 188 SVLITA 193 >UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; cellular organisms|Rep: Cytochrome c oxidase subunit I - Pandaka lidwilli Length = 507 Score = 74.5 bits (175), Expect = 2e-12 Identities = 37/82 (45%), Positives = 46/82 (56%) Frame = +2 Query: 8 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 187 PG+L+GDDQIYN IVTAHA N L+PL++GAPD+AFPR+NN+ F Sbjct: 33 PGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFW 92 Query: 188 XXXXXXXXXXXXXIVENGAGTG 253 +E GAGTG Sbjct: 93 LLPPSFLLLLASSGIEAGAGTG 114 Score = 62.9 bits (146), Expect = 6e-09 Identities = 36/66 (54%), Positives = 38/66 (57%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPL+ N+AH G SVDL IFSLHLAGISS S Q PLFV Sbjct: 116 TVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVW 175 Query: 436 AVGITA 453 AV ITA Sbjct: 176 AVLITA 181 >UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Dicyema misakiense|Rep: Cytochrome c oxidase subunit I - Dicyema misakiense Length = 473 Score = 74.1 bits (174), Expect = 3e-12 Identities = 30/47 (63%), Positives = 38/47 (80%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 I+ D++L T F+D GGDP+LYQHLF FFGHPEVY++ILP FG+ S Sbjct: 193 ILTDKHLGTCFYDATMGGDPLLYQHLFWFFGHPEVYVVILPVFGLFS 239 Score = 34.3 bits (75), Expect = 2.6 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 348 T YPPLSS SV+ ++FSLHLAGI+S Sbjct: 117 TFYPPLSS----LSPSVEFSVFSLHLAGIAS 143 >UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides borealis Length = 513 Score = 73.7 bits (173), Expect = 3e-12 Identities = 40/84 (47%), Positives = 47/84 (55%) Frame = +2 Query: 2 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181 G PG+L+GDDQ N IVTAHA N LVPL++GAPD+AFPR+NN+ Sbjct: 43 GQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMS 102 Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253 F VE GAGTG Sbjct: 103 FWLLPPSFLLLLASSTVEAGAGTG 126 >UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit 1 - Munidopsis verrucosus Length = 154 Score = 73.3 bits (172), Expect = 5e-12 Identities = 47/116 (40%), Positives = 56/116 (48%) Frame = +1 Query: 103 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKNCRKWCRNRITVYPPLSSN 282 W IWKL P NK YKILT PL Y K+N PL+S+ Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRNSS-----------PLASS 76 Query: 283 IAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 450 IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV IT Sbjct: 77 IAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFIT 132 >UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; Endopterygota|Rep: Cytochrome c oxidase subunit I - Copitarsia incommoda Length = 150 Score = 70.9 bits (166), Expect = 2e-11 Identities = 32/44 (72%), Positives = 33/44 (75%) Frame = +1 Query: 514 KLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFTRIWYNFSY 645 K KYIIF S W F+STFILIFWT SLYFNFT IWYNFSY Sbjct: 7 KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFNFTSIWYNFSY 50 >UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I) (Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1); n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I) (Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) - Synechocystis sp. (strain PCC 6803) Length = 551 Score = 70.5 bits (165), Expect = 3e-11 Identities = 28/39 (71%), Positives = 34/39 (87%) Frame = +2 Query: 524 TSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 TSFF+P GGGDP++YQHLF F+ HP VYI+ILP FG+IS Sbjct: 228 TSFFNPVGGGDPVVYQHLFWFYSHPAVYIMILPFFGVIS 266 Score = 33.5 bits (73), Expect = 4.5 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = +2 Query: 32 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184 ++YN ++T H N L+PL++G D+AFPR+N + F Sbjct: 67 EMYNQLMTLHGTIMIFLWIVPAGAAFA-NYLIPLMVGTEDMAFPRLNAVAF 116 >UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces maris DSM 8797 Length = 754 Score = 70.1 bits (164), Expect = 4e-11 Identities = 30/47 (63%), Positives = 37/47 (78%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 ++ DR L ++FFDP GG +L+QH F FGHPEVYILILPGFG+IS Sbjct: 228 LLIDRWLGSAFFDPTRGGSAVLWQHYFWIFGHPEVYILILPGFGMIS 274 Score = 33.1 bits (72), Expect = 5.9 Identities = 13/23 (56%), Positives = 18/23 (78%) Frame = +2 Query: 116 N*LVPLILGAPDIAFPRINNIRF 184 N VPL++GA D+AFPR+N+ F Sbjct: 99 NYFVPLMIGARDVAFPRLNSFGF 121 >UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 - Tetrahymena pyriformis Length = 698 Score = 69.3 bits (162), Expect = 7e-11 Identities = 30/44 (68%), Positives = 36/44 (81%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 DR+ T+FF+ A GGDPIL QHLF FFGHPEVY+LI+P FG I+ Sbjct: 373 DRHWQTTFFEYAYGGDPILSQHLFWFFGHPEVYVLIIPTFGFIN 416 Score = 36.7 bits (81), Expect = 0.48 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = +2 Query: 23 GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184 GD Y +VTAH N L+P +G+ D+A+PR+N+I F Sbjct: 99 GDSLRYLQVVTAHGLIMVFFVVVPILFGGFANFLIPYHVGSKDVAYPRLNSIGF 152 >UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; cellular organisms|Rep: Cytochrome C oxidase subunit I - Rhizobium loti (Mesorhizobium loti) Length = 623 Score = 68.9 bits (161), Expect = 1e-10 Identities = 29/48 (60%), Positives = 38/48 (79%) Frame = +2 Query: 497 NIINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 ++I DR + T FF+PA GGD +L+QHLF FFGHPEVYI+ LP G++S Sbjct: 224 SLILDRLVGTHFFNPAEGGDVLLWQHLFWFFGHPEVYIIFLPAVGMVS 271 >UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4; Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1 - Halobacterium salinarium (Halobacterium halobium) Length = 593 Score = 68.9 bits (161), Expect = 1e-10 Identities = 30/47 (63%), Positives = 37/47 (78%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 ++ DRN T+FF AGG DPI +QHLF FFGHPEVY+L+LP GI+S Sbjct: 264 LLLDRNFGTTFFTVAGG-DPIFWQHLFWFFGHPEVYVLVLPPMGIVS 309 Score = 32.7 bits (71), Expect = 7.8 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +2 Query: 35 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184 +YN ++T+H N +PL++ A D+AFPRIN I F Sbjct: 109 LYNGLLTSHGITMLFLFGTPMIAAFG-NYFIPLLIDADDMAFPRINAIAF 157 >UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; Bacteria|Rep: Cytochrome c oxidase subunit I - Synechococcus sp. (strain CC9311) Length = 564 Score = 68.1 bits (159), Expect = 2e-10 Identities = 27/47 (57%), Positives = 35/47 (74%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 ++ D + TSFF P GGGDP+L+QH F F+ HP VY+L+LP FGI S Sbjct: 235 LLFDLSFGTSFFRPEGGGDPVLFQHFFWFYSHPAVYVLVLPVFGIFS 281 Score = 35.9 bits (79), Expect = 0.84 Identities = 19/59 (32%), Positives = 28/59 (47%) Frame = +2 Query: 8 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184 P L+ D +YN + T H N L+P ++GAPD+AFP++N F Sbjct: 69 PADLV-DPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMIGAPDMAFPKLNAAAF 125 >UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp. RS-1 Length = 641 Score = 68.1 bits (159), Expect = 2e-10 Identities = 31/47 (65%), Positives = 36/47 (76%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 ++ DR+ T FF P GGD +L+QHLF FFGHPEVYILILP GIIS Sbjct: 227 LLFDRHFGTRFFLPNLGGDAVLWQHLFWFFGHPEVYILILPTMGIIS 273 >UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Watasenia scintillans|Rep: Cytochrome c oxidase subunit I - Watasenia scintillans (Sparkling enope) Length = 217 Score = 68.1 bits (159), Expect = 2e-10 Identities = 31/61 (50%), Positives = 38/61 (62%) Frame = +2 Query: 2 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181 G PGSL+ DDQ+YN +VTAH N LVPL+LGAPD+AFPR+NN+ Sbjct: 26 GQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMS 85 Query: 182 F 184 F Sbjct: 86 F 86 Score = 33.1 bits (72), Expect = 5.9 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = +1 Query: 295 GRSVDLAIFSLHLAGISS 348 G SVDLAIF LHLAG+SS Sbjct: 122 GPSVDLAIFPLHLAGVSS 139 >UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena gracilis|Rep: Cytochrome oxidase subunit I - Euglena gracilis Length = 495 Score = 66.9 bits (156), Expect = 4e-10 Identities = 28/47 (59%), Positives = 38/47 (80%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 ++ DRN+N++ +D G DP+LYQHLF FFGHPEVY++ILP FG+ S Sbjct: 221 LLLDRNINSTIYDVIG--DPVLYQHLFWFFGHPEVYVIILPVFGLTS 265 Score = 33.1 bits (72), Expect = 5.9 Identities = 14/50 (28%), Positives = 23/50 (46%) Frame = +2 Query: 35 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184 IYN +T H N L+P+++G +++ PR+N I F Sbjct: 63 IYNNWITIHGLIMLFVFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISF 112 >UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5 precursor [Contains: Truncated non-functional cytochrome oxidase 1; Intron-encoded endonuclease aI5 (EC 3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable intron-encoded endonuclease aI5 precursor [Contains: Truncated non-functional cytochrome oxidase 1; Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago maydis (Smut fungus) Length = 536 Score = 66.5 bits (155), Expect = 5e-10 Identities = 34/79 (43%), Positives = 41/79 (51%) Frame = +2 Query: 17 LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 196 L GD Q+YN I+TAHA N LVP+++GAPD+AFPR+NNI F Sbjct: 47 LNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLP 106 Query: 197 XXXXXXXXXXIVENGAGTG 253 VE GAGTG Sbjct: 107 PSLILLLASAFVEQGAGTG 125 Score = 58.0 bits (134), Expect = 2e-07 Identities = 32/66 (48%), Positives = 38/66 (57%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPLS +H G SVDLAIFSLHL+GISS + +LPLFV Sbjct: 127 TVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVW 186 Query: 436 AVGITA 453 A+ +TA Sbjct: 187 AIFVTA 192 Score = 56.8 bits (131), Expect = 4e-07 Identities = 22/27 (81%), Positives = 25/27 (92%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF 580 ++ DRN NTSF+DPAGGGDPILYQHLF Sbjct: 209 LLTDRNFNTSFYDPAGGGDPILYQHLF 235 >UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4 precursor [Contains: Truncated non-functional cytochrome oxidase 1; Intron-encoded endonuclease aI4 (EC 3.1.-.-)]; n=3; Basidiomycota|Rep: Probable intron-encoded endonuclease aI4 precursor [Contains: Truncated non-functional cytochrome oxidase 1; Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago maydis (Smut fungus) Length = 530 Score = 66.5 bits (155), Expect = 5e-10 Identities = 34/79 (43%), Positives = 41/79 (51%) Frame = +2 Query: 17 LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 196 L GD Q+YN I+TAHA N LVP+++GAPD+AFPR+NNI F Sbjct: 47 LNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLP 106 Query: 197 XXXXXXXXXXIVENGAGTG 253 VE GAGTG Sbjct: 107 PSLILLLASAFVEQGAGTG 125 Score = 58.0 bits (134), Expect = 2e-07 Identities = 32/66 (48%), Positives = 38/66 (57%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPLS +H G SVDLAIFSLHL+GISS + +LPLFV Sbjct: 127 TVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVW 186 Query: 436 AVGITA 453 A+ +TA Sbjct: 187 AIFVTA 192 >UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2 precursor [Contains: Truncated non-functional cytochrome oxidase 1; Intron-encoded endonuclease aI2 (EC 3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable intron-encoded endonuclease aI2 precursor [Contains: Truncated non-functional cytochrome oxidase 1; Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago maydis (Smut fungus) Length = 533 Score = 66.5 bits (155), Expect = 5e-10 Identities = 34/79 (43%), Positives = 41/79 (51%) Frame = +2 Query: 17 LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 196 L GD Q+YN I+TAHA N LVP+++GAPD+AFPR+NNI F Sbjct: 47 LNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLP 106 Query: 197 XXXXXXXXXXIVENGAGTG 253 VE GAGTG Sbjct: 107 PSLILLLASAFVEQGAGTG 125 >UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like terminal oxidase, subunit I - Haloquadratum walsbyi (strain DSM 16790) Length = 634 Score = 66.1 bits (154), Expect = 7e-10 Identities = 31/48 (64%), Positives = 37/48 (77%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643 ++ DRN TSFF AG G IL+QHLF FFGHPEVYI++LP GIIS+ Sbjct: 296 LLFDRNFGTSFF--AGEGGAILWQHLFWFFGHPEVYIIVLPPMGIISY 341 Score = 41.9 bits (94), Expect = 0.013 Identities = 21/60 (35%), Positives = 32/60 (53%) Frame = +2 Query: 5 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184 +PG + + YN+++T+H N L+PL++GA D+AFPRIN I F Sbjct: 125 DPGMTVISNTFYNSLLTSHGITMLFLFATPIIAAFS-NYLIPLLIGADDMAFPRINAIAF 183 >UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Naupactini|Rep: Cytochrome c oxidase subunit I - Galapaganus collaris Length = 406 Score = 64.9 bits (151), Expect = 2e-09 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGH 595 ++ DRN+NTSFFDPAGGGDPILYQHLF F GH Sbjct: 128 LLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159 Score = 60.1 bits (139), Expect = 4e-08 Identities = 33/66 (50%), Positives = 39/66 (59%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TV PPLS+NIAH G SVDLAIFSLH+AG+ S + ++PLFV Sbjct: 46 TVSPPLSANIAHEGSSVDLAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVW 105 Query: 436 AVGITA 453 AV ITA Sbjct: 106 AVEITA 111 Score = 35.1 bits (77), Expect = 1.5 Identities = 21/46 (45%), Positives = 23/46 (50%) Frame = +2 Query: 131 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*QFTP 268 L LGAPD FPR N+ F VE GAGTG +P Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSP 49 >UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis Length = 622 Score = 64.5 bits (150), Expect = 2e-09 Identities = 27/44 (61%), Positives = 34/44 (77%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 DR T+FF+P GG+ ++++HLF FGHPEVYILILP FGI S Sbjct: 221 DRLFGTNFFNPELGGNTVIWEHLFWIFGHPEVYILILPAFGIFS 264 >UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase, subunit I - Myxococcus xanthus (strain DK 1622) Length = 556 Score = 64.1 bits (149), Expect = 3e-09 Identities = 24/36 (66%), Positives = 31/36 (86%) Frame = +2 Query: 533 FDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 FDPA GGDP+L+QHLF F+ HP VYI++LP FG++S Sbjct: 246 FDPARGGDPVLFQHLFWFYSHPAVYIMVLPSFGVMS 281 Score = 39.9 bits (89), Expect = 0.051 Identities = 20/55 (36%), Positives = 25/55 (45%) Frame = +2 Query: 8 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 172 PG I D YN T H N ++PL+LGA D+AFPR+N Sbjct: 74 PGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLMLGAKDVAFPRLN 128 >UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 - Sulfolobus acidocaldarius Length = 788 Score = 64.1 bits (149), Expect = 3e-09 Identities = 28/44 (63%), Positives = 33/44 (75%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 +R T FFD A GG P+L+Q LF FFGHPEVYILILP G++S Sbjct: 210 ERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVYILILPAMGLVS 253 >UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c oxidase polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3) subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c oxidase polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum Length = 591 Score = 64.1 bits (149), Expect = 3e-09 Identities = 32/57 (56%), Positives = 38/57 (66%), Gaps = 10/57 (17%) Frame = +2 Query: 500 IINDRNLNTSFFDPA----------GGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 ++ DR L TSFF P GGG P+L+QHLF FFGHPEVYI+ LP FGI+S Sbjct: 239 LLLDRLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFWFFGHPEVYIVALPAFGIVS 295 >UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; Actinobacteria (class)|Rep: Cytochrome c oxidase subunit 1 - Corynebacterium glutamicum (Brevibacterium flavum) Length = 584 Score = 64.1 bits (149), Expect = 3e-09 Identities = 28/47 (59%), Positives = 35/47 (74%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 ++ DR L +DPA GG +L+QHLF FFGHPEVY+L LP FGI+S Sbjct: 235 VLYDRKLGGHLYDPANGGS-LLWQHLFWFFGHPEVYVLALPFFGIVS 280 Score = 33.1 bits (72), Expect = 5.9 Identities = 13/23 (56%), Positives = 18/23 (78%) Frame = +2 Query: 116 N*LVPLILGAPDIAFPRINNIRF 184 N ++PL +GAPD+AFPR+N F Sbjct: 105 NYVLPLQIGAPDVAFPRLNAFGF 127 >UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4; cellular organisms|Rep: Cytochrome C oxidase subunit I /III - Pyrobaculum aerophilum Length = 800 Score = 63.3 bits (147), Expect = 5e-09 Identities = 28/52 (53%), Positives = 37/52 (71%), Gaps = 5/52 (9%) Frame = +2 Query: 500 IINDRNLNTSFF-----DPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 ++ +R+L FF DPA GDP L+QH+F FFGHPEVYIL+LP G++S Sbjct: 214 LLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWFFGHPEVYILVLPAMGLVS 265 >UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia cenocepacia MC0-3 Length = 1004 Score = 62.9 bits (146), Expect = 6e-09 Identities = 26/44 (59%), Positives = 32/44 (72%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 DRN T FFD A GG P+L+QHLF F HP VY+++LP GI+S Sbjct: 248 DRNAGTHFFDVAHGGRPLLWQHLFWMFAHPWVYVVVLPAMGIVS 291 >UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I - Aquifex aeolicus Length = 485 Score = 62.1 bits (144), Expect = 1e-08 Identities = 24/44 (54%), Positives = 34/44 (77%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 D+ L T+FF+PA GGDP++YQ++F F+ HP VY+ +LP FG S Sbjct: 168 DKYLGTNFFNPAKGGDPLIYQNIFWFYSHPVVYVQVLPVFGFYS 211 Score = 41.1 bits (92), Expect = 0.022 Identities = 19/55 (34%), Positives = 28/55 (50%) Frame = +2 Query: 8 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 172 PG + D + YN ++T H N L+PL++GA D+AFPR+N Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLN 56 >UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacterineae|Rep: Cytochrome-c oxidase - Anaeromyxobacter sp. Fw109-5 Length = 596 Score = 62.1 bits (144), Expect = 1e-08 Identities = 29/51 (56%), Positives = 36/51 (70%), Gaps = 5/51 (9%) Frame = +2 Query: 500 IINDRNLNTSFFDPA-----GGGDPILYQHLF*FFGHPEVYILILPGFGII 637 ++ DR+ T FF GGGDPIL+QHLF FGHPEVYI+ILP +GI+ Sbjct: 242 LLLDRSFGTEFFVAGASAVRGGGDPILWQHLFWIFGHPEVYIMILPAWGIL 292 Score = 34.3 bits (75), Expect = 2.6 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = +2 Query: 38 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184 Y I T H N L+PL++GA D+AFPR+N F Sbjct: 86 YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSF 134 >UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; Proteobacteria|Rep: Cytochrome c oxidase, subunit I - Mesorhizobium sp. (strain BNC1) Length = 845 Score = 61.7 bits (143), Expect = 1e-08 Identities = 25/44 (56%), Positives = 32/44 (72%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 +R+ FF GGDP+L+QHLF FFGHPEVYI+ LP G++S Sbjct: 238 ERSFGWPFFTAERGGDPLLWQHLFWFFGHPEVYIIFLPAAGLVS 281 >UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria bacterium (strain Ellin345) Length = 595 Score = 60.9 bits (141), Expect = 3e-08 Identities = 25/35 (71%), Positives = 28/35 (80%) Frame = +2 Query: 539 PAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643 P GGG +L+QHLF FFGHPEVYI ILP GI+SH Sbjct: 270 PHGGGSALLWQHLFWFFGHPEVYIAILPAMGIVSH 304 >UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; Bacteria|Rep: Cytochrome C oxidase subunit I - Symbiobacterium thermophilum Length = 628 Score = 60.5 bits (140), Expect = 3e-08 Identities = 27/44 (61%), Positives = 30/44 (68%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 DR +FF+ GG + YQHLF FGHPEVYILILP GIIS Sbjct: 232 DRTFAANFFEVLRGGSVVFYQHLFWTFGHPEVYILILPAMGIIS 275 >UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacteraceae|Rep: Cytochrome c, monohaem - Rhodobacter sphaeroides ATCC 17025 Length = 878 Score = 60.1 bits (139), Expect = 4e-08 Identities = 24/38 (63%), Positives = 29/38 (76%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 622 +R + FFDP GGDP+L+QHLF FGHPEVYI+ LP Sbjct: 254 ERGFDWPFFDPERGGDPLLWQHLFWIFGHPEVYIIFLP 291 >UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter shibae DFL 12|Rep: Cytochrome-c oxidase - Dinoroseobacter shibae DFL 12 Length = 853 Score = 60.1 bits (139), Expect = 4e-08 Identities = 25/44 (56%), Positives = 32/44 (72%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 +R L FFD GGDP+L+QHLF FGHPEVYI+ LP G+++ Sbjct: 254 ERLLGLPFFDHTLGGDPLLWQHLFWLFGHPEVYIIFLPAAGMVA 297 >UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa group|Rep: COX1-i5 protein - Yarrowia lipolytica (Candida lipolytica) Length = 608 Score = 59.3 bits (137), Expect = 8e-08 Identities = 26/39 (66%), Positives = 31/39 (79%) Frame = +2 Query: 503 INDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 619 I DRN NTSFF+ AGGGD +LYQHLF ++ HPEV I+ L Sbjct: 216 IFDRNFNTSFFEYAGGGDAVLYQHLFYWWNHPEVKIICL 254 Score = 56.8 bits (131), Expect = 4e-07 Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 2/94 (2%) Frame = +2 Query: 5 NPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNI 178 N GS L G+ Q +N ++TAHA N L+PL+LGA D+AF R+NNI Sbjct: 47 NTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFARLNNI 106 Query: 179 RFXXXXXXXXXXXXXXIVENGAGTG*QFTPHFHL 280 F +VE GAGTG +T +F L Sbjct: 107 SFWLLVPSLILILTSALVEAGAGTG--WTVYFPL 138 Score = 47.2 bits (107), Expect = 3e-04 Identities = 27/66 (40%), Positives = 34/66 (51%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVY PL+ +H G +VDLAIFSLHL+G SS ++ +PLF Sbjct: 133 TVYFPLAGIQSHSGPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENVPLFAW 192 Query: 436 AVGITA 453 AV TA Sbjct: 193 AVLFTA 198 >UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1)) Length = 607 Score = 58.8 bits (136), Expect = 1e-07 Identities = 25/44 (56%), Positives = 32/44 (72%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 +R + FF GGDP+L+QHLF FFGHPEVYI+ LP G++S Sbjct: 297 ERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVYIIFLPAAGMVS 340 >UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus flagellatus KT|Rep: Cytochrome-c oxidase - Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) Length = 631 Score = 58.8 bits (136), Expect = 1e-07 Identities = 26/44 (59%), Positives = 31/44 (70%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 DR FF A GDPIL+QHLF FFGHPEVYI+ +P G++S Sbjct: 235 DRMAGMHFFT-AASGDPILWQHLFWFFGHPEVYIIFIPALGMVS 277 >UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38; Bacteria|Rep: Cytochrome c oxidase subunit I type - Anaeromyxobacter sp. Fw109-5 Length = 555 Score = 58.8 bits (136), Expect = 1e-07 Identities = 22/36 (61%), Positives = 28/36 (77%) Frame = +2 Query: 533 FDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 FDPA GGDP+L+QH F F+ HP VYI++LP +IS Sbjct: 239 FDPARGGDPVLFQHFFWFYSHPAVYIMVLPAMAVIS 274 Score = 43.2 bits (97), Expect = 0.006 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Frame = +2 Query: 8 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 187 PG I D YN + T H N L+P+++GA D+AFP++N + F Sbjct: 67 PGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIGAKDVAFPKLNLLSF- 125 Query: 188 XXXXXXXXXXXXXIVENGAGTG*QF-TPH 271 +V+ GA TG F TP+ Sbjct: 126 YVYLAGAVVALFGMVQGGADTGWTFYTPY 154 >UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha (Liverwort) Length = 434 Score = 58.8 bits (136), Expect = 1e-07 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Frame = +2 Query: 8 PGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181 PG+ I G+ Q+YN ++TAHA N VP+++G+PD+AFPR+NNI Sbjct: 46 PGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGSPDMAFPRLNNIS 105 Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253 F +VE G G+G Sbjct: 106 FWLLPPSLLLLLSSALVEVGCGSG 129 >UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 precursor (DNA endonuclease I- SceII) [Contains: Truncated non-functional cytochrome oxidase 1; DNA endonuclease aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]; n=4; Saccharomycetales|Rep: Intron-encoded DNA endonuclease aI4 precursor (DNA endonuclease I- SceII) [Contains: Truncated non-functional cytochrome oxidase 1; DNA endonuclease aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)] - Saccharomyces cerevisiae (Baker's yeast) Length = 556 Score = 58.8 bits (136), Expect = 1e-07 Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Frame = +2 Query: 8 PGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181 PGS L G+ Q++N +V HA N L+PL++GA D AFPRINNI Sbjct: 43 PGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIA 102 Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253 F +VE+GAGTG Sbjct: 103 FWVLPMGLVCLVTSTLVESGAGTG 126 Score = 58.4 bits (135), Expect = 1e-07 Identities = 33/67 (49%), Positives = 38/67 (56%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPLSS AH G SVDLAIF+LHL ISS + +LPLFV Sbjct: 128 TVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVW 187 Query: 436 AVGITAF 456 ++ ITAF Sbjct: 188 SIFITAF 194 Score = 57.2 bits (132), Expect = 3e-07 Identities = 24/40 (60%), Positives = 31/40 (77%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 619 ++ DRN NTSFF+ +GGGDPILY+HLF FFG I++L Sbjct: 210 LLLDRNFNTSFFEVSGGGDPILYEHLFWFFGQTVATIIML 249 >UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxidase, subunit 1; n=2; Thermoprotei|Rep: Heme/copper-type cytochrome/quinol oxidase, subunit 1 - Cenarchaeum symbiosum Length = 508 Score = 58.4 bits (135), Expect = 1e-07 Identities = 25/53 (47%), Positives = 36/53 (67%) Frame = +2 Query: 479 FSWSYYNIINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 637 F+ + ++ DR + FF+PA GGDPI Y HLF F HPEVY+L++P G++ Sbjct: 204 FAAALLMLLTDRLGVSGFFNPAVGGDPIAYAHLFWFTFHPEVYVLVIPAIGMM 256 >UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I - Roseovarius nubinhibens ISM Length = 818 Score = 58.0 bits (134), Expect = 2e-07 Identities = 25/44 (56%), Positives = 30/44 (68%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 +R + FF A GGD +L+QHLF FGHPEVYI+ LP G IS Sbjct: 228 ERAFDMPFFQAAAGGDALLWQHLFWLFGHPEVYIIFLPAAGAIS 271 >UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC 1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus thermophilus|Rep: Cytochrome c oxidase polypeptide I+III (EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) Length = 791 Score = 58.0 bits (134), Expect = 2e-07 Identities = 21/47 (44%), Positives = 35/47 (74%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 ++ +R + S+F+PA GGDP+L+Q F F+ HP VY+++LP GI++ Sbjct: 219 VLLERKIGLSWFNPAVGGDPVLFQQFFWFYSHPTVYVMLLPYLGILA 265 Score = 35.1 bits (77), Expect = 1.5 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = +2 Query: 38 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 172 YN I+T H N +VPL+LGA D+A PR+N Sbjct: 66 YNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVALPRVN 110 >UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1; Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III - Aeropyrum pernix Length = 815 Score = 58.0 bits (134), Expect = 2e-07 Identities = 27/48 (56%), Positives = 35/48 (72%), Gaps = 1/48 (2%) Frame = +2 Query: 500 IINDRNLNTSFF-DPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 ++ DRNL T FF +PAGG +L+ HLF FFGHPEVYIL+ P G ++ Sbjct: 218 LLLDRNLGTEFFLNPAGGA--LLWDHLFWFFGHPEVYILLFPALGAMA 263 >UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteobacteria|Rep: Quinol oxidase subunit I - Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides) Length = 825 Score = 56.4 bits (130), Expect = 6e-07 Identities = 25/44 (56%), Positives = 29/44 (65%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 +R FF A GGD +L+QHLF FGHPEVYI+ LP G IS Sbjct: 228 ERAFGLPFFQVAEGGDSLLWQHLFWLFGHPEVYIIFLPAAGAIS 271 >UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica (Candida lipolytica) Length = 457 Score = 56.4 bits (130), Expect = 6e-07 Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Frame = +2 Query: 5 NPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNI 178 N GS L G+ Q +N ++TAHA N L+PL+LGA D+AF R+NNI Sbjct: 47 NTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFARLNNI 106 Query: 179 RFXXXXXXXXXXXXXXIVENGAGTG 253 F +VE GAGTG Sbjct: 107 SFWLLVPSLILILTSALVEAGAGTG 131 >UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; n=1; Saccharomyces castellii|Rep: I-SceII DNA endonuclease-like protein - Saccharomyces castellii (Yeast) Length = 598 Score = 56.4 bits (130), Expect = 6e-07 Identities = 29/79 (36%), Positives = 40/79 (50%) Frame = +2 Query: 17 LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 196 L G++Q++N +V HA N ++PL++GA D AFPRINNI F Sbjct: 48 LHGNNQLFNVLVVGHAILMIFFMVMPALIGGFGNYMLPLMIGATDTAFPRINNIGFWLLP 107 Query: 197 XXXXXXXXXXIVENGAGTG 253 +VE+GAGTG Sbjct: 108 MGLVCLVTSTLVESGAGTG 126 Score = 56.0 bits (129), Expect = 7e-07 Identities = 23/31 (74%), Positives = 27/31 (87%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFG 592 ++ DRN NTSFF+ AGGGDPILY+HLF FFG Sbjct: 210 LLLDRNFNTSFFEVAGGGDPILYEHLFWFFG 240 Score = 54.8 bits (126), Expect = 2e-06 Identities = 31/66 (46%), Positives = 37/66 (56%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPL+S AH G SVDLAIF+LH+ ISS + +LPLFV Sbjct: 128 TVYPPLASIQAHSGPSVDLAIFALHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVW 187 Query: 436 AVGITA 453 A+ ITA Sbjct: 188 AILITA 193 >UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I; n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O ubiquinol oxidase subunit I - Carsonella ruddii (strain PV) Length = 606 Score = 55.2 bits (127), Expect = 1e-06 Identities = 26/49 (53%), Positives = 32/49 (65%) Frame = +2 Query: 494 YNIINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 + I DR L+T F+ GG +LY +L +GHPEVYILILP FGI S Sbjct: 246 FQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILILPSFGIFS 294 >UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3) subunit 1); n=20; cellular organisms|Rep: Alternative Cytochrome c oxidase polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3) subunit 1) - Microscilla marina ATCC 23134 Length = 635 Score = 55.2 bits (127), Expect = 1e-06 Identities = 30/57 (52%), Positives = 37/57 (64%), Gaps = 10/57 (17%) Frame = +2 Query: 500 IINDRNLNTSFFDP----AG------GGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 +I DR+L TSFF AG GG P+L+QHLF F GHPEVYI+++P GI S Sbjct: 261 LIFDRSLGTSFFLSEIYIAGEALHHQGGSPVLFQHLFWFLGHPEVYIVLIPALGITS 317 >UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Blastopirellula marina DSM 3645|Rep: Cytochrome c oxidase subunit I - Blastopirellula marina DSM 3645 Length = 595 Score = 54.8 bits (126), Expect = 2e-06 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 11/60 (18%) Frame = +2 Query: 494 YNIINDRNLNTSFFDP-----------AGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 + ++ DR + T FF P AGGG P+L+QHLF F+ HP VYI+ILP G++S Sbjct: 245 FMMLADRLIGTGFFLPEGLVVNNSPMAAGGGQPLLWQHLFWFYSHPAVYIMILPAMGMVS 304 Score = 35.9 bits (79), Expect = 0.84 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +2 Query: 32 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184 + Y +VT HA N L+PL++GA D+AFP +N + + Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSY 136 >UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep: Cox-i3 protein - Candida stellata (Yeast) Length = 588 Score = 54.8 bits (126), Expect = 2e-06 Identities = 28/66 (42%), Positives = 39/66 (59%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 T+YPPL+S +H G S+D+AIF+LHL+G+SS + +LPLFV Sbjct: 145 TLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVW 204 Query: 436 AVGITA 453 +V ITA Sbjct: 205 SVLITA 210 Score = 53.6 bits (123), Expect = 4e-06 Identities = 23/42 (54%), Positives = 32/42 (76%), Gaps = 2/42 (4%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGH--PEVYILIL 619 ++ DRN NTSFF +GGGDP+LY+H+F FFG P + I+I+ Sbjct: 227 LLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGQIWPIIIIIII 268 Score = 53.2 bits (122), Expect = 5e-06 Identities = 27/83 (32%), Positives = 40/83 (48%) Frame = +2 Query: 5 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184 NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120 Query: 185 XXXXXXXXXXXXXXIVENGAGTG 253 +++ G G+G Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSG 143 >UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep: Cox-i2 protein - Candida stellata (Yeast) Length = 586 Score = 54.8 bits (126), Expect = 2e-06 Identities = 28/66 (42%), Positives = 39/66 (59%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 T+YPPL+S +H G S+D+AIF+LHL+G+SS + +LPLFV Sbjct: 145 TLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVW 204 Query: 436 AVGITA 453 +V ITA Sbjct: 205 SVLITA 210 Score = 53.2 bits (122), Expect = 5e-06 Identities = 27/83 (32%), Positives = 40/83 (48%) Frame = +2 Query: 5 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184 NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120 Query: 185 XXXXXXXXXXXXXXIVENGAGTG 253 +++ G G+G Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSG 143 Score = 46.4 bits (105), Expect = 6e-04 Identities = 24/45 (53%), Positives = 32/45 (71%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 634 ++ DRN NTSFF +GGGDP+LY+H+ F+ +P V ILI GI Sbjct: 227 LLMDRNFNTSFFVVSGGGDPLLYEHI--FYKNP-VLILIWLTSGI 268 >UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium cryptum (strain JF-5) Length = 689 Score = 54.0 bits (124), Expect = 3e-06 Identities = 24/44 (54%), Positives = 30/44 (68%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 DR L T FF GG+ +LY +LF +GHPEVY ++LP FG IS Sbjct: 275 DRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVVLPAFGFIS 318 >UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep: Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase BO(3) subunit 1) - Pseudomonas putida Length = 672 Score = 53.2 bits (122), Expect = 5e-06 Identities = 24/44 (54%), Positives = 31/44 (70%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 DR L+ F GG+P++Y +LF +GHPEVYILILP FG+ S Sbjct: 256 DRYLDFHIFTNELGGNPMMYVNLFWAWGHPEVYILILPAFGVFS 299 >UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I; n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase, subunit I - Chromobacterium violaceum Length = 680 Score = 52.8 bits (121), Expect = 7e-06 Identities = 24/44 (54%), Positives = 31/44 (70%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 DR L+ FF GG+ ++Y +LF +GHPEVYIL+LP FGI S Sbjct: 257 DRYLDFHFFTAELGGNAMMYLNLFWAWGHPEVYILVLPAFGIFS 300 >UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1; Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit 1 - Beggiatoa sp. PS Length = 525 Score = 52.8 bits (121), Expect = 7e-06 Identities = 20/43 (46%), Positives = 29/43 (67%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 637 D+ + T FFD A GGD + YQ+LF F+ HP VY++ LP ++ Sbjct: 212 DKYIGTHFFDAAAGGDALTYQNLFWFYSHPAVYVIFLPFMAMV 254 Score = 36.7 bits (81), Expect = 0.48 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = +2 Query: 11 GSLIGDD-QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 172 G I DD +YNT + H N +PL++GA D+AFPR+N Sbjct: 47 GPTITDDPSVYNTWLYFHGAAMILAFQIPALTGFFANYFIPLMIGAKDVAFPRVN 101 >UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) (Quinol oxidase polypeptide I) (Quinol oxidase aa3-600, subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45; Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-) (Quinol oxidase polypeptide I) (Quinol oxidase aa3-600, subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus subtilis Length = 649 Score = 52.8 bits (121), Expect = 7e-06 Identities = 24/44 (54%), Positives = 29/44 (65%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 DR FF GG P+L+ +LF +GHPEVYI+ILP FGI S Sbjct: 252 DRLFGAHFFTLEAGGMPMLWANLFWIWGHPEVYIVILPAFGIFS 295 Score = 34.7 bits (76), Expect = 1.9 Identities = 20/59 (33%), Positives = 26/59 (44%) Frame = +2 Query: 8 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184 P + D YN I T H N +VPL +GA D+AFP +NN+ F Sbjct: 85 PNNSFLDSNHYNEIFTTHGTIMIIFMAMPFLIGLI-NVVVPLQIGARDVAFPYLNNLSF 142 >UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyveromyces thermotolerans|Rep: Putative DNA endonuclease - Kluyveromyces thermotolerans (Yeast) Length = 542 Score = 52.4 bits (120), Expect = 9e-06 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Frame = +2 Query: 8 PGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181 PG+ L G+ Q++N +V HA N L+PL++GA D++F R+NNI Sbjct: 43 PGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGASDMSFARLNNIS 102 Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253 F +VE+GAGTG Sbjct: 103 FWLLPPALVCLVTSTLVESGAGTG 126 >UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas eutropha (strain C71) Length = 703 Score = 50.8 bits (116), Expect = 3e-05 Identities = 23/44 (52%), Positives = 30/44 (68%) Frame = +2 Query: 509 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 DR L+ FF GG+ + + ++F FGHPEVYILILP FG+ S Sbjct: 276 DRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVYILILPAFGVYS 319 >UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase subunit I - Planctomyces maris DSM 8797 Length = 606 Score = 50.4 bits (115), Expect = 4e-05 Identities = 19/32 (59%), Positives = 26/32 (81%) Frame = +2 Query: 545 GGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 GGG P+L+QHLF F+ HP VYI++LP G++S Sbjct: 276 GGGQPLLWQHLFWFYSHPAVYIMLLPIMGMVS 307 Score = 34.7 bits (76), Expect = 1.9 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +2 Query: 32 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184 + Y + T HA N L+PL++GA D+AFP++N + + Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSY 140 >UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase subunit I - Myrmarachne sp. G FSC-2006 Length = 129 Score = 50.4 bits (115), Expect = 4e-05 Identities = 23/31 (74%), Positives = 25/31 (80%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 348 TVYPPL+S + H G SVD AIFSLHLAG SS Sbjct: 22 TVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52 >UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; Deinococcus|Rep: Cytochrome c oxidase, subunit I - Deinococcus radiodurans Length = 820 Score = 49.6 bits (113), Expect = 6e-05 Identities = 20/39 (51%), Positives = 26/39 (66%) Frame = +2 Query: 518 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 634 L S F+P GG P+LYQ F F+ HP VY+++LP GI Sbjct: 233 LGLSMFNPGIGGVPVLYQQFFWFYSHPAVYVMLLPYLGI 271 >UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes cretinus|Rep: Cytochrome c oxidase subunit I - Aedes cretinus Length = 153 Score = 48.0 bits (109), Expect = 2e-04 Identities = 37/113 (32%), Positives = 43/113 (38%) Frame = +1 Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435 TVYPPLSS AH G SVDLAI+S I+ +F + + Sbjct: 43 TVYPPLSSGTAHAGASVDLAIYS---TVINMRSAGITLDRFFFTFSSNFLNFSITFICMI 99 Query: 436 AVGITAFXXXXXXXXXXXXXQYY*RSKLKYIIF*SCWRRRPNFISTFILIFWT 594 F K KY IF W P +STFILIFWT Sbjct: 100 CCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152 Score = 45.6 bits (103), Expect = 0.001 Identities = 21/41 (51%), Positives = 26/41 (63%) Frame = +2 Query: 131 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG 253 L+LGAPD+AFPR+NN+ F +VENGAGTG Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTG 41 >UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon buchholtzi (Butterflyfish) Length = 184 Score = 47.2 bits (107), Expect = 3e-04 Identities = 19/20 (95%), Positives = 20/20 (100%) Frame = +2 Query: 584 FFGHPEVYILILPGFGIISH 643 FFGHPEVYILILPGFG+ISH Sbjct: 2 FFGHPEVYILILPGFGMISH 21 >UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I - Aplidium nordmanni Length = 227 Score = 46.4 bits (105), Expect = 6e-04 Identities = 21/30 (70%), Positives = 23/30 (76%) Frame = +1 Query: 259 VYPPLSSNIAHRGRSVDLAIFSLHLAGISS 348 VYPP SS +AH +VDL IF LHLAGISS Sbjct: 118 VYPPXSSGLAHSSGAVDLGIFXLHLAGISS 147 Score = 32.7 bits (71), Expect = 7.8 Identities = 21/58 (36%), Positives = 26/58 (44%) Frame = +2 Query: 11 GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 184 G +IG QI VTA A L PL +GAP +A PR+ N+ F Sbjct: 35 GQVIGXGQIXXVGVTAXALVMIFFFVMPTLXGGFGXXLXPLXVGAPXMAXPRLXNMSF 92 >UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Digenea|Rep: Cytochrome c oxidase subunit I - Echinostoma hortense Length = 154 Score = 44.0 bits (99), Expect = 0.003 Identities = 17/20 (85%), Positives = 19/20 (95%) Frame = +2 Query: 584 FFGHPEVYILILPGFGIISH 643 FFGHPEVY+LILP FGI+SH Sbjct: 1 FFGHPEVYVLILPVFGIVSH 20 >UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Halobacteriaceae|Rep: Cytochrome c oxidase subunit I - Haloarcula marismortui (Halobacterium marismortui) Length = 854 Score = 43.2 bits (97), Expect = 0.006 Identities = 17/35 (48%), Positives = 23/35 (65%) Frame = +2 Query: 536 DPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 640 D G +L+ HLF FFGHPEVYI+ P G+++ Sbjct: 243 DADNPGASLLWAHLFWFFGHPEVYIVFFPALGVMA 277 >UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase subunit I - Tetragona dorsalis ziegleri Length = 111 Score = 42.3 bits (95), Expect = 0.010 Identities = 19/40 (47%), Positives = 26/40 (65%) Frame = +2 Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 619 +++DRN N FF GG PIL+Q++ FGH +V LIL Sbjct: 42 LLSDRNFNKFFFILIGGEYPILHQYMLWLFGHTDVLFLIL 81 >UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III; n=2; Thermoplasmatales|Rep: Cytochrome c oxidase polypeptide I/III - Picrophilus torridus Length = 841 Score = 41.9 bits (94), Expect = 0.013 Identities = 15/27 (55%), Positives = 23/27 (85%) Frame = +2 Query: 551 GDPILYQHLF*FFGHPEVYILILPGFG 631 G +++++LF +FGHPEVY+L+LPG G Sbjct: 255 GGALMWENLFWYFGHPEVYLLLLPGTG 281 >UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1; Harmonia axyridis|Rep: Cytochrome c oxidase subunit 2 - Harmonia axyridis (Multicolored Asian lady beetle) Length = 193 Score = 40.7 bits (91), Expect = 0.029 Identities = 15/25 (60%), Positives = 19/25 (76%) Frame = +1 Query: 571 TFILIFWTS*SLYFNFTRIWYNFSY 645 + ++IFW+S SLYFN IWYNF Y Sbjct: 2 SLVMIFWSSSSLYFNSPSIWYNFPY 26 >UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome oxidase; n=1; Acidithiobacillus ferrooxidans|Rep: Sub-unit I of an aa3-type cytochrome oxidase - Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans) Length = 627 Score = 36.3 bits (80), Expect = 0.63 Identities = 17/36 (47%), Positives = 19/36 (52%) Frame = +2 Query: 527 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 634 S F G P+ Y F F HPEVY+ ILP F I Sbjct: 311 SHFYTGPTGHPLAYLDQFWFLFHPEVYVFILPAFAI 346 >UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4; Chloroflexaceae|Rep: Cytochrome c oxidase, subunit I - Roseiflexus sp. RS-1 Length = 561 Score = 33.9 bits (74), Expect = 3.4 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +2 Query: 548 GGDPILYQHLF*FFGHPEVYILILPGF 628 G DP+L + LF F GHP VY +LP + Sbjct: 224 GTDPVLARTLFWFTGHPIVYFWLLPAY 250 >UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2; Bruchidius|Rep: Cytochrome c oxidase subunit I - Bruchidius aff. varius GLK-2003 Length = 339 Score = 33.9 bits (74), Expect = 3.4 Identities = 14/15 (93%), Positives = 15/15 (100%) Frame = +2 Query: 599 EVYILILPGFGIISH 643 EVYILILPGFG+ISH Sbjct: 155 EVYILILPGFGMISH 169 >UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1; Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I - Aquifex aeolicus Length = 592 Score = 33.5 bits (73), Expect = 4.5 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = +2 Query: 554 DPILYQHLF*FFGHPEVYILILPGF 628 +P+L + LF FFGHP VY +LP + Sbjct: 209 NPLLARTLFWFFGHPVVYFWLLPAY 233 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 476,373,973 Number of Sequences: 1657284 Number of extensions: 8146212 Number of successful extensions: 15946 Number of sequences better than 10.0: 103 Number of HSP's better than 10.0 without gapping: 14920 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 15753 length of database: 575,637,011 effective HSP length: 97 effective length of database: 414,880,463 effective search space used: 48541014171 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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