Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1063
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    91   1e-19

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 36/50 (72%), Positives = 44/50 (88%)
 Frame = +2

Query: 494 YNIINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           + + +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P FG++SH
Sbjct: 214 FMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSH 263



 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +2

Query: 8   PGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 181
           PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A+PR+NN  
Sbjct: 49  PGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRVNNFT 108

Query: 182 FXXXXXXXXXXXXXXIVENGAGTG 253
           F              + E G G G
Sbjct: 109 FWLLPPALMLLLISALTEEGPGGG 132



 Score = 51.6 bits (118), Expect = 9e-08
 Identities = 29/66 (43%), Positives = 35/66 (53%)
 Frame = +1

Query: 256 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 435
           TVYPPLSS  +H G ++DLAI SL L GISS                   S  Q+PLF  
Sbjct: 134 TVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAW 193

Query: 436 AVGITA 453
           A+ IT+
Sbjct: 194 AIMITS 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,785
Number of Sequences: 5004
Number of extensions: 33602
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)