Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1063
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine re...    29   2.1  
Z70037-3|CAC42352.1|  902|Caenorhabditis elegans Hypothetical pr...    27   8.6  
D84668-1|BAA86913.1|  902|Caenorhabditis elegans CLH-1 protein.        27   8.6  

>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -2

Query: 605 KLQDVQKIKINVDIKLGLLLQQDQKMMYLSFDR 507
           KLQD+QK+K +VD+ +   L +D+  + +  DR
Sbjct: 822 KLQDIQKVKQDVDVSIFEELGEDETCLEVRADR 854


>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -2

Query: 605 KLQDVQKIKINVDIKLGLLLQQDQKMMYLSFDR 507
           KLQD+QK+K +VD+ +   L +D+  + +  DR
Sbjct: 822 KLQDIQKVKQDVDVSIFEELGEDETCLEVRADR 854


>AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein17 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 500 IINDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 643
           ++ + N ++ F DP  G DP LY++    F +  V I  +  +G IS+
Sbjct: 184 VVFNENYSSWFTDPGLGHDPALYKNSLIAFNNFAVAICTIVFYGYISY 231


>Z70037-3|CAC42352.1|  902|Caenorhabditis elegans Hypothetical
           protein T27D12.2b protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -1

Query: 234 STILLEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPP 103
           S I   INN+R G  + N      GNA+    +I G    P  P
Sbjct: 698 SEIFSTINNLRRGSLAANGAHMSSGNALMTDRNISGNTLLPQSP 741


>D84668-1|BAA86913.1|  902|Caenorhabditis elegans CLH-1 protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -1

Query: 234 STILLEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPP 103
           S I   INN+R G  + N      GNA+    +I G    P  P
Sbjct: 698 SEIFSTINNLRRGSLAANGAHMSSGNALMTDRNISGNTLLPQSP 741


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,023,379
Number of Sequences: 27780
Number of extensions: 198075
Number of successful extensions: 405
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)