Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1062
(533 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 138 6e-34
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 138 6e-34
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 138 6e-34
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 41 1e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 30 0.25
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 28 0.76
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 27 1.3
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 1.8
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 2.3
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 4.1
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 5.4
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 25 7.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.1
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 25 9.4
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 25 9.4
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 138 bits (333), Expect = 6e-34
Identities = 58/75 (77%), Positives = 68/75 (90%)
Frame = +1
Query: 256 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 435
GGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++
Sbjct: 171 GGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAP 230
Query: 436 GRKVGLIAARRTGRL 480
G+KVGLIAARRTG L
Sbjct: 231 GQKVGLIAARRTGLL 245
Score = 132 bits (318), Expect = 4e-32
Identities = 59/84 (70%), Positives = 70/84 (83%)
Frame = +2
Query: 2 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 181
FVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +T
Sbjct: 86 FVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKT 145
Query: 182 RVKLPSGAKKVLPSSNRGMVGIVA 253
RVKLPSGAKKV+PSS RG+VGIVA
Sbjct: 146 RVKLPSGAKKVVPSSARGVVGIVA 169
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 138 bits (333), Expect = 6e-34
Identities = 58/75 (77%), Positives = 68/75 (90%)
Frame = +1
Query: 256 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 435
GGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++
Sbjct: 171 GGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAP 230
Query: 436 GRKVGLIAARRTGRL 480
G+KVGLIAARRTG L
Sbjct: 231 GQKVGLIAARRTGLL 245
Score = 132 bits (318), Expect = 4e-32
Identities = 59/84 (70%), Positives = 70/84 (83%)
Frame = +2
Query: 2 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 181
FVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +T
Sbjct: 86 FVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKT 145
Query: 182 RVKLPSGAKKVLPSSNRGMVGIVA 253
RVKLPSGAKKV+PSS RG+VGIVA
Sbjct: 146 RVKLPSGAKKVVPSSARGVVGIVA 169
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 138 bits (333), Expect = 6e-34
Identities = 58/75 (77%), Positives = 68/75 (90%)
Frame = +1
Query: 256 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 435
GGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++
Sbjct: 171 GGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAP 230
Query: 436 GRKVGLIAARRTGRL 480
G+KVGLIAARRTG L
Sbjct: 231 GQKVGLIAARRTGLL 245
Score = 132 bits (318), Expect = 4e-32
Identities = 59/84 (70%), Positives = 70/84 (83%)
Frame = +2
Query: 2 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 181
FVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +T
Sbjct: 86 FVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKT 145
Query: 182 RVKLPSGAKKVLPSSNRGMVGIVA 253
RVKLPSGAKKV+PSS RG+VGIVA
Sbjct: 146 RVKLPSGAKKVVPSSARGVVGIVA 169
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 41.1 bits (92), Expect = 1e-04
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1
Query: 331 PYVRGVAMNPVEHPHGGGNHQHIG 402
P VRG AMNP +HPHGGG + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 29.9 bits (64), Expect = 0.25
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 276 RFVNTSTSATIPTM-PLLLDGRTFLAPDGSFTLVRLASGLCPITVAKF 136
RF+N +T+++ PLLLD + S +V +ASG+ P+ KF
Sbjct: 120 RFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKF 167
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 0.76
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 265 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 357
++KPI K+K K +CW +RG N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = -3
Query: 252 ATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 85
AT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 247 ATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 1.8
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 4/131 (3%)
Frame = -3
Query: 507 SFFVSVLPPQSS--GPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLY-RVHG-NTT 340
S FV+ L +SS G ASS+ + A SS +GSL Y T V ++ R G ++T
Sbjct: 425 STFVTSLLRRSSIDGSASSSSASLAVPTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDST 484
Query: 339 YIWPAVTFDLVLVVCPSSFQNRFVNTSTSATIPTMPLLLDGRTFLAPDGSFTLVRLASGL 160
+ + F +S Q +S+ T + + + G+ + L+S
Sbjct: 485 PVTSSSIFSTATEATDTSVQTSSAIYDSSS---TSNIQSSSSVYASSTGALSSNSLSSST 541
Query: 159 CPITVAKFPEA 127
++ + P A
Sbjct: 542 SSVSTSYIPNA 552
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 2.3
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -3
Query: 495 SVLPPQSSGPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVRM-LYRVHGNTTYIWPAVT 319
S++PP S+ S+ T T+ ++ + T L TTT V+ TT + P
Sbjct: 68 SIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTH 127
Query: 318 FDLVLVVCPSSFQN 277
+ VV P++ N
Sbjct: 128 VNTTTVVPPTTHVN 141
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 114 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 16
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 5.4
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Frame = -3
Query: 522 IINLGSFFVSV-LPPQS--SGPASSNKTNFATSRCSSLDSGSLTYMLMVTT--------T 376
I + G + ++ +PP S +G + SN T +TS SG T + TT T
Sbjct: 50 IYSQGEYETTITIPPNSYSNGVSLSNGTLLSTSSPLISTSGQFTSNNVSTTSSQRHNTKT 109
Query: 375 VRMLYRVHGNTTYIWPAV-TFDLVLVVCPSSFQNRFVNTSTSATIPTMP 232
+ T+ + T D+V PSS +++ N + S +PT P
Sbjct: 110 ITFFSGTSDYTSVYYDTTGTDDVVYEYHPSSERHKSTNDTWSTNLPTNP 158
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 25.0 bits (52), Expect = 7.1
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = -3
Query: 288 SFQNRFVNTSTSATIPTMPLLLDGRTFLAPDGSFTLV----RLASGLCPITVAKFPEARA 121
SF+ + NT+T + + LDGR +P G V L + L + + P
Sbjct: 37 SFRRFWKNTATKIQNGEVLIQLDGRNLKSPSGKIVKVPKEMELLAHLIALEWDRLPSTSV 96
Query: 120 RRPLSPIFS 94
R+ PI S
Sbjct: 97 RQHNLPITS 105
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 7.1
Identities = 16/74 (21%), Positives = 33/74 (44%)
Frame = -3
Query: 462 SSNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLYRVHGNTTYIWPAVTFDLVLVVCPSSF 283
S+N+T+ + +S+ + S + T+ + N T V+ PS+F
Sbjct: 643 STNRTSTTFTSSTSISTSSSSTATSSTSFASESSSFYSNVTTSSSTVSTPPPTTSFPSTF 702
Query: 282 QNRFVNTSTSATIP 241
F+ +S+ ++IP
Sbjct: 703 TTSFITSSSLSSIP 716
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = -3
Query: 507 SFFVSVLPPQSSGPAS----SNKTNFATSRCSSLD 415
S ++ LPP S G S S +NF +S C+ +D
Sbjct: 567 SNMLNTLPPTSQGATSTTVSSASSNFLSSSCTPID 601
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 207 LAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPI 100
+AP + T+ ++A+GLC + RA PL PI
Sbjct: 116 IAPLSANTMAKMANGLCDNLLTSL--IRAWAPLKPI 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,343
Number of Sequences: 5004
Number of extensions: 49880
Number of successful extensions: 153
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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