Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1062
(533 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 142 2e-34
06_02_0282 + 13720419-13720985 37 0.012
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 31 0.44
12_02_0917 + 24281029-24281137,24281998-24282095,24282196-242823... 30 1.3
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 1.8
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611... 29 2.4
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 29 3.1
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656... 29 3.1
02_04_0503 + 23526699-23527112 28 4.1
11_06_0377 - 22900042-22900452,22900527-22902236 27 7.2
11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460 27 7.2
06_02_0045 + 10927561-10927614,10927693-10928052 27 7.2
03_02_0191 - 6270591-6271364,6271458-6272168 27 7.2
01_03_0232 + 14030821-14030904,14031029-14031374,14031475-140315... 27 7.2
09_02_0059 - 3716345-3716674 27 9.5
05_07_0285 + 28982502-28982782,28982888-28982989,28983189-289840... 27 9.5
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 142 bits (344), Expect = 2e-34
Identities = 62/75 (82%), Positives = 67/75 (89%)
Frame = +1
Query: 256 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 435
GGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R
Sbjct: 172 GGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPP 231
Query: 436 GRKVGLIAARRTGRL 480
G+KVGLIAARRTGRL
Sbjct: 232 GQKVGLIAARRTGRL 246
Score = 122 bits (295), Expect = 1e-28
Identities = 52/84 (61%), Positives = 69/84 (82%)
Frame = +2
Query: 2 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 181
FVYCG++ATL +GNV+P+ ++PEG +VCN+E +GDRG ARASG++A VI HNPD +
Sbjct: 87 FVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTS 146
Query: 182 RVKLPSGAKKVLPSSNRGMVGIVA 253
R+KLPSGAKK++PSS R M+G VA
Sbjct: 147 RIKLPSGAKKIVPSSCRAMIGQVA 170
>06_02_0282 + 13720419-13720985
Length = 188
Score = 36.7 bits (81), Expect = 0.012
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 367 HPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTGRLWRQDRYK 501
+PHGGG H + +R G + +AARR G +W R++
Sbjct: 47 NPHGGGGHAPLPPPQNPRRPNLVGAEEVAVAARRRGGMWMGSRWR 91
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -3
Query: 510 GSFFVSVLPPQSSGPASSNKTNFAT 436
G V +LPP SS PAS+ KT+F+T
Sbjct: 754 GRVVVPLLPPGSSSPASNYKTSFST 778
>12_02_0917 +
24281029-24281137,24281998-24282095,24282196-24282372,
24282490-24282590,24282684-24282759,24282843-24282902,
24282999-24283195,24283296-24283392,24283478-24283564,
24283925-24283983,24284535-24284626,24284706-24284783,
24284891-24285051,24285303-24285530
Length = 539
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 269 SIRPPQQQYRPCLCCLMAEPSWLQTVAL 186
++ PP +Q+ C+ + PSW+Q AL
Sbjct: 15 AVFPPHEQFHHLAYCVHSNPSWVQVAAL 42
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1
Query: 130 LWKLRHCDWT 159
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>06_01_0811 -
6113491-6113925,6114079-6114185,6114569-6114788,
6115112-6115199,6115301-6115431,6115924-6116099,
6116465-6116529,6117014-6117094,6117219-6117358,
6117446-6117532,6117614-6117827,6118102-6118260,
6118860-6118936,6119629-6119796
Length = 715
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 258 WTY*QTYFESWKGIPQVQG 314
WTY T+F SW +P +QG
Sbjct: 72 WTYWSTFFLSWSIVPTLQG 90
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -1
Query: 161 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 72
C W++ H+P L H + +C WY
Sbjct: 73 CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102
>01_01_0841 -
6564029-6564348,6564654-6564686,6564793-6565450,
6565530-6565694,6565789-6565878,6565982-6566182,
6566525-6566737,6566835-6567077
Length = 640
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 343 GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVG 450
G+A N PHG NHQH ++ T++ K G
Sbjct: 524 GIAANHTSLPHGA-NHQHASPVEIEQKATASWEKDG 558
>02_04_0503 + 23526699-23527112
Length = 137
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +1
Query: 205 QEGSAIKQQRHGRYCC*GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 384
+EG ++ +H R+C G + GR + K+ C P A +P HP GGG
Sbjct: 61 EEGPKLEHDKHERHCMAGSAATSNLGSEGRGGKRPKILVVCSPQ----APSP-PHPVGGG 115
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 23 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRL-ARASGNFATVIGHNPDAKRTRVK 190
A L+ G P+G + E VC L + D R+ A +G + G PD + RV+
Sbjct: 373 AALDDGEERPLGGLVEELFVCRLGD--DDEVRVGANHNGEGRRLRGPRPDGEEARVR 427
>11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460
Length = 515
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 370 PHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTGRLWR 486
P+GGGNH GK +G G +G + A++ + R
Sbjct: 322 PNGGGNHPAQGKKGGGGQGGGVGGPMGGMPAQQQAMMMR 360
>06_02_0045 + 10927561-10927614,10927693-10928052
Length = 137
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 376 GGGNHQHIGKASTVKRGTSAGRKVGLIAARRTG 474
GGG H + + V+ T AGR V +A R G
Sbjct: 45 GGGGHVQLVRTLVVRAKTRAGRSVYEVAVRMGG 77
>03_02_0191 - 6270591-6271364,6271458-6272168
Length = 494
Score = 27.5 bits (58), Expect = 7.2
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
Frame = -3
Query: 483 PQSSGPASSNKTNFATSRCSSLDSGSLTYML---MVTTTVRMLYRVHGNTTYIWPAVTFD 313
P ++G + S K + L + LT +L M T + + G +W ++ D
Sbjct: 2 PGAAGYSGSVKLKYVKLGYQYLVNHFLTLLLVPVMAATALELARMGPGELLSLWRSLQLD 61
Query: 312 LVLVVCPSSFQNRFVNTSTSATIPTMPLLLDGRTFLAP 199
LV ++C S F FV T + P L+D + P
Sbjct: 62 LVHILC-SVFLVVFVGTVYFMSRPRPVYLVDYSCYKPP 98
>01_03_0232 +
14030821-14030904,14031029-14031374,14031475-14031599,
14031927-14032023,14032459-14032691,14032765-14032885,
14033319-14033374,14033630-14033703,14034193-14034239,
14034458-14034507,14034860-14034922,14035160-14035240,
14035517-14035627,14035714-14035789,14036216-14036358,
14036775-14036848,14037304-14037409,14037492-14037547,
14038272-14038378,14041150-14041598
Length = 832
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +2
Query: 107 DRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAEVDVLTNL 277
DR +L + +G F TVI H+ K+ R + +K+ + MV + E+++ T L
Sbjct: 370 DRRQLEQLTGEFYTVIPHDFGFKKMREFIIDTPQKL--KAKLEMVEALGEIEIATKL 424
>09_02_0059 - 3716345-3716674
Length = 109
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Frame = -1
Query: 482 HNLPVLRAAIRPTLRP----------ADVPLLTVEALPIC*WLPPP 375
H+LP L A PTL+P D T + P+C LPPP
Sbjct: 10 HHLPPLVTAAGPTLQPTTFTAATGGATDEAATTAASYPVCAELPPP 55
>05_07_0285 +
28982502-28982782,28982888-28982989,28983189-28984006,
28984594-28985050,28985203-28985242
Length = 565
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 442 KVGLIAARRTGRLWRQDRYKEG 507
K G++A T L+R+ RYKEG
Sbjct: 150 KGGILATTATTNLYRRQRYKEG 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,359,444
Number of Sequences: 37544
Number of extensions: 367498
Number of successful extensions: 1264
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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