Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1062
(533 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 148 2e-36
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 131 4e-31
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 42 2e-04
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 33 0.15
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_36232| Best HMM Match : PTS_EIIA_1 (HMM E-Value=8.1) 29 3.2
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 29 3.2
SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_53910| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_57630| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 148 bits (359), Expect = 2e-36
Identities = 66/75 (88%), Positives = 68/75 (90%)
Frame = +1
Query: 256 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 435
GGRIDKP+LKAGRAYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG STV+R T A
Sbjct: 172 GGRIDKPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDTPA 231
Query: 436 GRKVGLIAARRTGRL 480
GRKVGLIAARRTG L
Sbjct: 232 GRKVGLIAARRTGLL 246
Score = 140 bits (338), Expect = 9e-34
Identities = 62/84 (73%), Positives = 73/84 (86%)
Frame = +2
Query: 2 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 181
F+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRT
Sbjct: 87 FIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRT 146
Query: 182 RVKLPSGAKKVLPSSNRGMVGIVA 253
RVKLPSG KKV+PSSNR +VGIVA
Sbjct: 147 RVKLPSGIKKVIPSSNRALVGIVA 170
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 131 bits (316), Expect = 4e-31
Identities = 57/79 (72%), Positives = 68/79 (86%)
Frame = +2
Query: 2 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 181
F+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRT
Sbjct: 45 FIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRT 104
Query: 182 RVKLPSGAKKVLPSSNRGM 238
RVKLPSG KKV+PSSNR +
Sbjct: 105 RVKLPSGIKKVIPSSNRAL 123
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/80 (33%), Positives = 43/80 (53%)
Frame = +2
Query: 23 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSG 202
A L+ G+ P+ +P GT+V N+E G +LARA+G A +I + V+LPS
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSK 167
Query: 203 AKKVLPSSNRGMVGIVAEVD 262
+K + S VG V+ ++
Sbjct: 168 VEKEVSSKCLASVGRVSNIE 187
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 33.1 bits (72), Expect = 0.15
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -3
Query: 318 FDLVLVVCPSSFQNRFVNT--STSATIPTMPLLLDGRTFLAPDGSFT 184
F L V PSS QN F + + +AT + L+LD TFL PDGS T
Sbjct: 114 FSLNCDVIPSS-QNAFQSFEFNPAATTTYLNLILDSETFLEPDGSAT 159
>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2408
Score = 31.1 bits (67), Expect = 0.59
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 504 FFVSVLPPQSSGPASSNKTNFATSRCSSLDSGSLTYML 391
FF LPP SS A +N+ +A + C S+D + YML
Sbjct: 2118 FFQLRLPPYSSQEAMANRLRYAINNCRSIDMDN--YML 2153
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 119 LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 247
+AR +G+F T + D RTR P KKVL ++N G + I
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513
>SB_36232| Best HMM Match : PTS_EIIA_1 (HMM E-Value=8.1)
Length = 175
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 164 PDAKRTRVKLPSGAKKV---LPSSNRGMVGIVAEVDVLTNLF*KLEGHTTSTRSNVTAG 331
P+A T+V +PS A +P S+ G V + ++L N+ + GH NVT G
Sbjct: 5 PNAGPTKVDIPSNAPTPGGEVPLSSEPEEGEVVDGEILGNVAPNVNGHEEIGSLNVTQG 63
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 164 PDAKRTRVKLPSGAKKV---LPSSNRGMVGIVAEVDVLTNLF*KLEGHTTSTRSNVTAG 331
P+A T+V +PS A +P S+ G V + ++L N+ + GH NVT G
Sbjct: 1191 PNAGPTKVDIPSNAPTPGGEVPLSSEPEEGEVVDGEILGNVAPNVNGHEEIGSLNVTQG 1249
>SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 455 IRPTLRPADVPLLTVEALPIC*WLPPP*GCSTGFMATPRTYGQQLRLTLYLWYA 294
IRP + V L V + + WLP + + P Y +R TL+L Y+
Sbjct: 222 IRPRDKELGVALFIVTVVSLLTWLPDAVVLNLDSVLAPAQYKHAVRSTLFLRYS 275
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 38 GNVMPVGAMPEGTIVCNLEEKMGDRGRLAR-ASGNFATVIG 157
G+ PV +P G +C + +G R AR G F ++ G
Sbjct: 737 GHSKPVDGLPRGDAICGCPKAIGRRHARARLLEGRFLSISG 777
>SB_53910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 187 YSCTLSIRIVSNHSGEVSRG 128
Y+CTL+I + H GE+ RG
Sbjct: 11 YACTLNINVGVKHPGEMFRG 30
>SB_57630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 27.1 bits (57), Expect = 9.6
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = -3
Query: 267 NTSTSATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSR 88
N S T+ T+ L D R A G+ ++ ++ LC A P AR PLS I +S
Sbjct: 15 NYKRSLTLTTLKLS-DSRDNEADRGAEPVIIASTILCECIDASTPGARITNPLSRIRTSD 73
Query: 87 L 85
L
Sbjct: 74 L 74
>SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -3
Query: 366 LYRVHGNTTYIWPAVTFDLVLVVCPSSFQNRFVNTSTSATIPTMPLL 226
L ++GNT ++PA T LVL SS Q N+ TI T +L
Sbjct: 19 LQLLYGNTERLYPAYTILLVLAFI-SSLQALLGNSLVFCTIMTSKIL 64
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,459,120
Number of Sequences: 59808
Number of extensions: 416156
Number of successful extensions: 1077
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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