Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1062
(533 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical pr... 142 1e-34
AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical ... 40 0.001
Z81587-6|CAB04704.1| 417|Caenorhabditis elegans Hypothetical pr... 32 0.30
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr... 27 8.5
L11247-6|AAA28005.2| 367|Caenorhabditis elegans Hypothetical pr... 27 8.5
AF220526-1|AAF43009.1| 332|Caenorhabditis elegans DNAse II homo... 27 8.5
>Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical
protein B0250.1 protein.
Length = 260
Score = 142 bits (344), Expect = 1e-34
Identities = 62/75 (82%), Positives = 67/75 (89%)
Frame = +1
Query: 256 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 435
GGR DKP+LKAGR+YHKYK KRN WP VRGVAMNPVEHPHGGGNHQHIG STV+R SA
Sbjct: 172 GGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASA 231
Query: 436 GRKVGLIAARRTGRL 480
G+KVGLIAARRTGR+
Sbjct: 232 GKKVGLIAARRTGRI 246
Score = 133 bits (321), Expect = 9e-32
Identities = 54/84 (64%), Positives = 72/84 (85%)
Frame = +2
Query: 2 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 181
F++CG KA +++GN++PVG +PEGT +CN+E K GDRG +ARASGN+ATVI HNPD K+T
Sbjct: 87 FIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKT 146
Query: 182 RVKLPSGAKKVLPSSNRGMVGIVA 253
R++LPSGAKKV+ S NR M+G+VA
Sbjct: 147 RIRLPSGAKKVVQSVNRAMIGLVA 170
>AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical
protein F56B3.8 protein.
Length = 321
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +2
Query: 38 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 214
GN P+G++ GT++ ++E D +A+G AT++ H D T VKLP +
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLPHKHEFS 217
Query: 215 LPSSNRGMVGIVAEVDVLTNLF*KLEGH 298
L + VG ++ D+ +F + H
Sbjct: 218 LHRTCMATVGRLSHADIDGKIFGSAQMH 245
>Z81587-6|CAB04704.1| 417|Caenorhabditis elegans Hypothetical
protein T06G6.8 protein.
Length = 417
Score = 31.9 bits (69), Expect = 0.30
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Frame = -3
Query: 345 TTYIWPAVTFDLVLVVCPSSFQNRFVNTSTSATIPTMPLLLDGRTFLAPDGSFTLVRLAS 166
T+ +W A T L PS ++ ++T+A +PT TF AP S
Sbjct: 223 TSSVWKATTTPSDLPTKPSRTRSLTSTSTTTAKLPT----TTSTTFAAPQASTEPSEATE 278
Query: 165 GLCPITVAKFPEARARRPLSPIFSSR-LHTMVPSGIAPTGITFPTSRVA 22
L T A P + R ++ I +R L + + + T T+R+A
Sbjct: 279 ALATATPADLPTKPSGREITTITGTRKLSSTSTTKLPKTASKTSTARLA 327
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2
Query: 152 IGHNPDAKRTRVKLPSGAKKVL 217
IGH D +RTR LP+G KKVL
Sbjct: 57 IGHGSD-RRTRFVLPNGYKKVL 77
>Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical
protein H05G16.1 protein.
Length = 1111
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 298 YHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTS 432
Y+K++ + P++ ++ P +H G +GK+ T TS
Sbjct: 414 YNKHQNTHSSMPHIAHISSQPADHSFSGTLDARVGKSVTRDPSTS 458
>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
protein T16G12.5 protein.
Length = 1142
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = -3
Query: 405 LTYMLMVTTTVRMLYRVHGNTTYIWPAVTFDLVLVVCPSSFQNRFVNTSTSATIPT 238
L+ ML + M+ + W F+L++ CP ++V+T +IP+
Sbjct: 176 LSTMLTKNELIHMISELITPPAETWKNDPFELLVKKCPKDLFEKYVDTPNEDSIPS 231
>L11247-6|AAA28005.2| 367|Caenorhabditis elegans Hypothetical
protein F09G8.2 protein.
Length = 367
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -2
Query: 220 WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHH 44
W +L+ + TL++ N SG+ TC +TS TH + ++ G L +S++ H
Sbjct: 234 WNDLISRQN---KVTLAVESWLNGSGDDIHTTCTSTSQTHDVTEMRVTG-LNFASSKDH 288
>AF220526-1|AAF43009.1| 332|Caenorhabditis elegans DNAse II homolog
F09G8.2 protein.
Length = 332
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -2
Query: 220 WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHH 44
W +L+ + TL++ N SG+ TC +TS TH + ++ G L +S++ H
Sbjct: 209 WNDLISRQN---KVTLAVESWLNGSGDDIHTTCTSTSQTHDVTEMRVTG-LNFASSKDH 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,399,824
Number of Sequences: 27780
Number of extensions: 290459
Number of successful extensions: 752
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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