Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1062
(533 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 142 1e-34
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 140 4e-34
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 138 2e-33
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 49 2e-06
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 49 2e-06
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 46 2e-05
At2g22730.1 68415.m02694 transporter-related low similarity to s... 32 0.28
At1g48940.1 68414.m05483 plastocyanin-like domain-containing pro... 30 0.84
At1g68530.2 68414.m07829 very-long-chain fatty acid condensing e... 29 1.5
At1g68530.1 68414.m07828 very-long-chain fatty acid condensing e... 29 1.5
At5g52600.1 68418.m06531 myb family transcription factor (MYB82)... 29 2.6
At5g01540.1 68418.m00069 lectin protein kinase, putative similar... 28 3.4
At3g17460.1 68416.m02229 PHD finger family protein contains Pfam... 28 3.4
At4g33410.1 68417.m04748 signal peptide peptidase family protein... 27 5.9
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 27 5.9
At3g61210.1 68416.m06850 embryo-abundant protein-related similar... 27 7.9
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 27 7.9
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 142 bits (345), Expect = 1e-34
Identities = 62/75 (82%), Positives = 67/75 (89%)
Frame = +1
Query: 256 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 435
GGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R
Sbjct: 172 GGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPP 231
Query: 436 GRKVGLIAARRTGRL 480
G+KVGLIAARRTGRL
Sbjct: 232 GKKVGLIAARRTGRL 246
Score = 120 bits (288), Expect = 8e-28
Identities = 51/84 (60%), Positives = 68/84 (80%)
Frame = +2
Query: 2 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 181
F+YCGKKATL VGNV+P+ ++PEG ++CN+E +GDRG ARASG++A VI HNPD +
Sbjct: 87 FLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTS 146
Query: 182 RVKLPSGAKKVLPSSNRGMVGIVA 253
R+KLPSG+KK++PS R M+G VA
Sbjct: 147 RIKLPSGSKKIVPSGCRAMIGQVA 170
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 140 bits (340), Expect = 4e-34
Identities = 62/74 (83%), Positives = 64/74 (86%)
Frame = +1
Query: 256 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 435
GGR +KP LKAG AYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R SA
Sbjct: 173 GGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSA 232
Query: 436 GRKVGLIAARRTGR 477
G KVG IAARRTGR
Sbjct: 233 GAKVGQIAARRTGR 246
Score = 124 bits (300), Expect = 3e-29
Identities = 53/84 (63%), Positives = 71/84 (84%)
Frame = +2
Query: 2 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 181
++YCGKKA L VGNV+P+G++PEG ++CN+E +GDRG LARASG++A VI HNP++ T
Sbjct: 88 YLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTT 147
Query: 182 RVKLPSGAKKVLPSSNRGMVGIVA 253
RVKLPSG+KK+LPS+ R M+G VA
Sbjct: 148 RVKLPSGSKKILPSACRAMIGQVA 171
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 138 bits (334), Expect = 2e-33
Identities = 61/75 (81%), Positives = 66/75 (88%)
Frame = +1
Query: 256 GGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 435
GGR +KP+LKAG AYHKY+VKRN WP VRGVAMNPVEHPHGGGNHQHIG ASTV+R
Sbjct: 172 GGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPP 231
Query: 436 GRKVGLIAARRTGRL 480
G+KVGLIAARRTGRL
Sbjct: 232 GQKVGLIAARRTGRL 246
Score = 124 bits (300), Expect = 3e-29
Identities = 54/84 (64%), Positives = 70/84 (83%)
Frame = +2
Query: 2 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 181
F+YCGKKATL VGNV+P+ ++PEG +VCN+E +GDRG LARASG++A VI HNPD+ T
Sbjct: 87 FLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTT 146
Query: 182 RVKLPSGAKKVLPSSNRGMVGIVA 253
R+KLPSG+KK++PS R M+G VA
Sbjct: 147 RIKLPSGSKKIVPSGCRAMIGQVA 170
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = +2
Query: 35 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 214
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 215 LPSSNRGMVGIVA 253
+ + R +G V+
Sbjct: 118 INAKCRATIGTVS 130
Score = 40.7 bits (91), Expect = 6e-04
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
Frame = +1
Query: 307 YKVKRNCW----PYVRGVAMNPVEHPHGGG 384
YK ++ W P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = +2
Query: 35 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 214
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 215 LPSSNRGMVGIVA 253
+ + R +G V+
Sbjct: 118 INAKCRATIGTVS 130
Score = 40.7 bits (91), Expect = 6e-04
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
Frame = +1
Query: 307 YKVKRNCW----PYVRGVAMNPVEHPHGGG 384
YK ++ W P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/27 (74%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +1
Query: 304 KYKVKRNCWPYVRGVAM-NPVEHPHGG 381
K +KRN W VRGVAM NPVEHPHGG
Sbjct: 411 KLMIKRNMWAKVRGVAMMNPVEHPHGG 437
>At2g22730.1 68415.m02694 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003974, GI:12003976, GI:12003972,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 510
Score = 31.9 bits (69), Expect = 0.28
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Frame = -3
Query: 318 FDLVLVVCP--SSFQNRFVNTSTSATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITV 145
F V ++C + F+ +ATIP LL G TFL FT L S I +
Sbjct: 337 FGAVTIICGIVGTLSGGFILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIAL 396
Query: 144 AKFPEARARRPLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 16
E +P+ LH + PS + P + T + F
Sbjct: 397 FALGELLVFATQAPVNYVCLHCVKPS-LRPLSMAISTVAIHIF 438
>At1g48940.1 68414.m05483 plastocyanin-like domain-containing
protein
Length = 177
Score = 30.3 bits (65), Expect = 0.84
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -3
Query: 486 PPQSSGPASSNKTNFATSRCSS-LDSGSLTYMLMVTTTVRML 364
PP SS PAS++K N A + S L +G +T ++V T ++
Sbjct: 136 PPSSSLPASAHKKNHAVRKTSRFLGAGLVTISILVITVFSLV 177
>At1g68530.2 68414.m07829 very-long-chain fatty acid condensing
enzyme (CUT1) identical to very-long-chain fatty acid
condensing enzyme (CUT1) GB:AF129511 (required for
cuticular wax biosynthesis and pollen fertility:
Millar,A.A., et al., Plant Cell (1999))
Length = 377
Score = 29.5 bits (63), Expect = 1.5
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Frame = -3
Query: 483 PQSSGP--ASSNKTNFATSRCSSLDSGSLTYML---MVTTTVRMLYRVHGNTTYIWPAVT 319
PQ+ P +SS K + L + L+++L M V +L +W ++
Sbjct: 2 PQAPMPEFSSSVKLKYVKLGYQYLVNHFLSFLLIPIMAIVAVELLRMGPEEILNVWNSLQ 61
Query: 318 FDLVLVVCPSSFQNRFVNTSTSATIPTMPLLLDGRTFLAP 199
FDLV V+C SSF F++T + P L+D + P
Sbjct: 62 FDLVQVLC-SSFFVIFISTVYFMSKPRTIYLVDYSCYKPP 100
>At1g68530.1 68414.m07828 very-long-chain fatty acid condensing
enzyme (CUT1) identical to very-long-chain fatty acid
condensing enzyme (CUT1) GB:AF129511 (required for
cuticular wax biosynthesis and pollen fertility:
Millar,A.A., et al., Plant Cell (1999))
Length = 497
Score = 29.5 bits (63), Expect = 1.5
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Frame = -3
Query: 483 PQSSGP--ASSNKTNFATSRCSSLDSGSLTYML---MVTTTVRMLYRVHGNTTYIWPAVT 319
PQ+ P +SS K + L + L+++L M V +L +W ++
Sbjct: 2 PQAPMPEFSSSVKLKYVKLGYQYLVNHFLSFLLIPIMAIVAVELLRMGPEEILNVWNSLQ 61
Query: 318 FDLVLVVCPSSFQNRFVNTSTSATIPTMPLLLDGRTFLAP 199
FDLV V+C SSF F++T + P L+D + P
Sbjct: 62 FDLVQVLC-SSFFVIFISTVYFMSKPRTIYLVDYSCYKPP 100
>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB82) mRNA, partial cds GI:3941515
Length = 201
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +1
Query: 280 LKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGR 441
++ R K VKR W + + HG GN I + S +KRG + R
Sbjct: 1 MECKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCR 54
>At5g01540.1 68418.m00069 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 682
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 194 PSGAKKVLPSSNRGMVGIVAEVDVLTNL 277
P KK++PSS +G+ VAE++ L L
Sbjct: 391 PIAVKKIIPSSRQGVREFVAEIESLGKL 418
>At3g17460.1 68416.m02229 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 198
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 257 PQQQYRPCLCCLMAEPSWLQTV 192
P+Q+ R C+ C EPS++ TV
Sbjct: 3 PEQKQRECIVCREKEPSFIHTV 24
>At4g33410.1 68417.m04748 signal peptide peptidase family protein
contains Pfam domain PF04258: Membrane protein of
unknown function (DUF435)
Length = 372
Score = 27.5 bits (58), Expect = 5.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1
Query: 308 YLWYALPAFKIGL 270
Y+WYALP + IGL
Sbjct: 301 YIWYALPGYAIGL 313
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 145 GEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNF 32
G+V GTC +A +G +R N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154
>At3g61210.1 68416.m06850 embryo-abundant protein-related similar to
embryo-abundant protein [Picea glauca] GI:1350531
Length = 261
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -3
Query: 375 VRMLYRVHGNTTYIWPAVTFDLVLVVCPSSFQNRFVNTSTSATIPTMPLLLDG 217
V+ + R G +W V DL++ S R V+++ PTM L DG
Sbjct: 125 VKRVLRKQGGIIVVW--VYNDLIITPKVDSIMKRLVDSTLPYRNPTMNLAFDG 175
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 170 HQDCVQSQWRSFQRHVPDDLYHPFSLQDCTQW 75
H+ Q WRS + HV D+L P ++C W
Sbjct: 667 HKFFKQVMWRSSKVHVADELQLP-PQEECVSW 697
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,748,802
Number of Sequences: 28952
Number of extensions: 276149
Number of successful extensions: 853
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -