Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1061
         (429 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    36   0.27 
UniRef50_Q4D940 Cluster: Signal recognition particle protein, pu...    35   0.82 
UniRef50_A6TUK0 Cluster: Electron transfer flavoprotein, alpha/b...    33   3.3  
UniRef50_A0GZ80 Cluster: Putative uncharacterized protein; n=2; ...    32   4.4  
UniRef50_Q44R29 Cluster: Electron transfer flavoprotein beta-sub...    31   7.7  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    31   7.7  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 36.3 bits (80), Expect = 0.27
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = -3

Query: 403 R*VDELSVHLVLSGYWSP 350
           R VDEL+ HLVLSGYWSP
Sbjct: 158 RWVDELTAHLVLSGYWSP 175


>UniRef50_Q4D940 Cluster: Signal recognition particle protein,
           putative; n=2; Trypanosoma|Rep: Signal recognition
           particle protein, putative - Trypanosoma cruzi
          Length = 763

 Score = 34.7 bits (76), Expect = 0.82
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 429 FFFFFFYCLDEWTS-SQSTWC*VVTGAHRHLQRKCATHL 316
           FFFFFF C+ +    S S W  V +   RHL+R+  T +
Sbjct: 9   FFFFFFLCVCDCVPLSDSLWLAVCSNVVRHLERRVCTRM 47


>UniRef50_A6TUK0 Cluster: Electron transfer flavoprotein,
           alpha/beta-subunit-like protein; n=2; Clostridiales|Rep:
           Electron transfer flavoprotein, alpha/beta-subunit-like
           protein - Alkaliphilus metalliredigens QYMF
          Length = 265

 Score = 32.7 bits (71), Expect = 3.3
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 374 GVKWLLEPIDIYNVNAPPTLRYKFQGLSIVTTAAPPFKPKAL 249
           GV+ ++ P+D+Y + +   L+ K+ G   V T  PP   KAL
Sbjct: 29  GVESVINPLDLYAIESGIQLKEKYGGKVTVFTMGPPSATKAL 70


>UniRef50_A0GZ80 Cluster: Putative uncharacterized protein; n=2;
           Chloroflexus|Rep: Putative uncharacterized protein -
           Chloroflexus aggregans DSM 9485
          Length = 201

 Score = 32.3 bits (70), Expect = 4.4
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -2

Query: 395 GRALSPPGVKWLLEPIDIYNVNAPPTLRYKFQGLSIVTTAAPPFK-PKALLLHGRNRQGG 219
           GRA+ PP    +  P++ YN N+P  +  +  G  +     P  K   ALL HG++R   
Sbjct: 50  GRAMQPPPANTV--PLNSYNPNSP-LMTGRIDG-QLADQLPPELKLDAALLAHGQSRYNA 105

Query: 218 VTYPC 204
              PC
Sbjct: 106 FCAPC 110


>UniRef50_Q44R29 Cluster: Electron transfer flavoprotein
           beta-subunit; n=1; Chlorobium limicola DSM 245|Rep:
           Electron transfer flavoprotein beta-subunit - Chlorobium
           limicola DSM 245
          Length = 254

 Score = 31.5 bits (68), Expect = 7.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 371 VKWLLEPIDIYNVNAPPTLRYKFQGLSIVTTAAPPFKPKALL 246
           V W++ P D Y +     L+ +F G ++V  AA P   K LL
Sbjct: 31  VAWVMNPYDEYALEEALRLKERFPGSAVVALAAAPEAGKELL 72


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 31.5 bits (68), Expect = 7.7
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -1

Query: 228 AGWCYLSVRTHKRSYH 181
           A W YL  RTHKRSYH
Sbjct: 569 AEWWYLPARTHKRSYH 584


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 452,787,099
Number of Sequences: 1657284
Number of extensions: 8919754
Number of successful extensions: 19026
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19018
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20653970351
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)