Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1061
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    30   0.18 
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   3.8  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   3.8  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    25   3.8  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   5.0  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   6.6  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    24   8.7  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    24   8.7  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   8.7  

>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 265 SNRKHYCFTAEIGRVVLPIRANSQEVLPL 179
           SN K +CF+  +G +  P+R  +Q+ LPL
Sbjct: 243 SNLKRFCFSESLGHIFAPLRFQNQQ-LPL 270


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 350 IDIYNVNAPPTLRYKFQGLSIVTTAAPPFKPKALLLHGRNR 228
           I   N+     L  KF+  S V    P ++PK  + HG NR
Sbjct: 676 ISYANIQGKDRLIEKFRN-SCVMDENPAYRPKIFVSHGPNR 715


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 175 ITQIIILRV*FLLHDVIPSLWKSILNV 95
           +T  I+L + F+LHD   S+W+S++ +
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 218 VTYPCELTRGPTTSNYANYNFAGLIFIT*CYSFTVEVNI 102
           VT P ELT  P   N+ N +    I+I+  Y   + +NI
Sbjct: 153 VTVPLELTVAPLIINFWNASGPVSIWISVFYVIIIAINI 191


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +3

Query: 141 KNQTRKIIICVITSGRT 191
           K+  +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 353  PIDIYNVNAPPTLRYKFQGLSIVTTAAPPFKPKALL 246
            PI     +  PT+  +FQ + I    + PFK + L+
Sbjct: 2291 PIFALTADMQPTMETQFQEVGITHYLSKPFKKETLI 2326


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 1   KDMTSGAFVLSDPPVFESQAGTNFSMKYVLNKRSILTST 117
           + +TSG  V + P V  S A T+F    VL   +  +ST
Sbjct: 456 RSVTSGQSVSATPTVSMSIAATSFGSSLVLTASASPSST 494


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 12   VRCIRVERSTGVRISGRYEFFYEIRTQQTFNIDF 113
            V  +    S  +R +GR   FY+++    ++IDF
Sbjct: 1217 VNIVITPESESIRRTGRQIKFYKVKALTKYDIDF 1250


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 389 ALSPPGVKWLLEPIDIYNVNAPPTLR 312
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,374
Number of Sequences: 5004
Number of extensions: 37578
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)