Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1061
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0548 - 10467342-10468810,10470309-10471632                       28   2.8  
01_06_0414 + 29182350-29183812,29184211-29184346                       28   3.7  
03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332     27   4.9  
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907...    27   6.4  
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950...    27   8.5  
04_04_0903 - 29269794-29270141,29270227-29270751                       27   8.5  

>09_02_0548 - 10467342-10468810,10470309-10471632
          Length = 930

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 242 HGRNRQGGVTYPCEL 198
           H RN+  GV YPCEL
Sbjct: 896 HERNKYAGVAYPCEL 910


>01_06_0414 + 29182350-29183812,29184211-29184346
          Length = 532

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 173 YANYNFAGLIF-IT*CYSFTVEVNIERLLSTYFIEKF 66
           +A  N+ G I  +T  YSF VE+ I+ ++  YF ++F
Sbjct: 250 HALTNYRGWILALTYGYSFGVELTIDNVVHQYFYDRF 286


>03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332
          Length = 190

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 270 WSSRCNYTETLELISQGGWRIYVVDVYGLQ 359
           WS    Y++T EL+ + GW+ + VD  G+Q
Sbjct: 72  WSIGVAYSDTGELVLRSGWKEF-VDANGVQ 100


>11_06_0395 +
           23088737-23088823,23090198-23090346,23090570-23090708,
           23090795-23090889,23090967-23091080,23091674-23091803,
           23091931-23092052,23092889-23093007,23093946-23094034,
           23094072-23094245,23094310-23094616,23094726-23095180,
           23095334-23096315,23096381-23097396,23097757-23097792,
           23098065-23098130
          Length = 1359

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 60  CLRFEHRWIAQHECTGRHI 4
           CLR E     QH+CT RH+
Sbjct: 751 CLRLESSGYMQHKCTVRHL 769


>05_03_0356 +
           12894195-12894237,12894347-12894484,12894868-12895018,
           12895399-12895526,12895704-12895840,12896742-12896847,
           12898659-12898762,12899159-12899281,12899620-12899700,
           12900159-12900304,12902171-12902243,12902970-12903060,
           12904978-12905018,12906079-12906153,12906402-12906569,
           12907638-12907676,12907759-12907847,12908014-12908078,
           12908794-12908840,12908924-12908983,12909168-12909239,
           12910143-12910172,12910526-12910617,12910719-12910802,
           12911941-12912046,12912171-12912233,12912776-12912870,
           12913000-12913180
          Length = 875

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 263 KPKALLLHGRNRQGGVTYPCELTRGPTTSNYANYNF 156
           K K LL  GR+ + GV Y C     P T  +  + F
Sbjct: 412 KDKLLLQEGRDVRWGVHYNCRQKVTPATEGFGAFMF 447


>04_04_0903 - 29269794-29270141,29270227-29270751
          Length = 290

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 242 HGRNRQGGVTYPCEL 198
           HGR+R+ GVTYP  L
Sbjct: 54  HGRHRRTGVTYPVSL 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,363,132
Number of Sequences: 37544
Number of extensions: 252505
Number of successful extensions: 556
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)