Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1061
         (429 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)                      27   6.6  
SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12)        27   6.6  
SB_21607| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  
SB_51377| Best HMM Match : IL8 (HMM E-Value=10)                        27   8.7  
SB_13856| Best HMM Match : CXC (HMM E-Value=0.021)                     27   8.7  

>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 3312

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 296 DLGTYISRWVAHLRCRCLWAPVT 364
           D G Y+++ V H+R +  W PV+
Sbjct: 901 DTGHYVTQGVVHMRTQNTWVPVS 923


>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2141

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 396 WTSSQSTWC*VVTGAHRHLQRKCATHLEI*VPRSQYSYNGCST 268
           WT    T   +VT  H+HL     TH  + + +S ++   C+T
Sbjct: 467 WTHKDLT---IVTWTHKHLTIVTWTHKHLTIKQSDFAIKQCNT 506


>SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12)
          Length = 515

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +3

Query: 252 CFRFEGWSSRCNYTETLELISQGGWRIYVVDVYG 353
           CFR+   SS C+Y++ + + + GG+  Y+ ++YG
Sbjct: 78  CFRY---SSCCDYSQNVNVRNCGGF--YIYEIYG 106


>SB_21607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 303 PRSQYSYNGCSTLQTESITASRQK*AGWCYLSVRT 199
           PRS Y+Y   + LQT+   A   K  G  +  + T
Sbjct: 84  PRSAYTYTNTNILQTQDTQAREHKNCGMVHRGMST 118


>SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 228 PISAVKQ*CFRFEGWSSRCNYTETLELI 311
           P++ V    F +E +SSRC Y E +E+I
Sbjct: 742 PLAVVDGLKFVYENYSSRCWYWEIVEMI 769


>SB_51377| Best HMM Match : IL8 (HMM E-Value=10)
          Length = 123

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 3   GYDVR--CIRVERSTGVRISGRYEFFYEIRTQ 92
           GY +R  C R+++S GV  +GRY  F  IR Q
Sbjct: 94  GYSLRGGCSRLDKSVGV--TGRYNNFITIRFQ 123


>SB_13856| Best HMM Match : CXC (HMM E-Value=0.021)
          Length = 464

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 3   GYDVR--CIRVERSTGVRISGRYEFFYEIRTQ 92
           GY +R  C R+++S GV  +GRY  F  IR Q
Sbjct: 435 GYSLRGGCSRLDKSVGV--TGRYNNFITIRFQ 464


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,053,262
Number of Sequences: 59808
Number of extensions: 285767
Number of successful extensions: 540
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)