BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1061 (429 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0) 27 6.6 SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6 SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12) 27 6.6 SB_21607| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7 SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7 SB_51377| Best HMM Match : IL8 (HMM E-Value=10) 27 8.7 SB_13856| Best HMM Match : CXC (HMM E-Value=0.021) 27 8.7 >SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0) Length = 3312 Score = 27.1 bits (57), Expect = 6.6 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = +2 Query: 296 DLGTYISRWVAHLRCRCLWAPVT 364 D G Y+++ V H+R + W PV+ Sbjct: 901 DTGHYVTQGVVHMRTQNTWVPVS 923 >SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2141 Score = 27.1 bits (57), Expect = 6.6 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = -1 Query: 396 WTSSQSTWC*VVTGAHRHLQRKCATHLEI*VPRSQYSYNGCST 268 WT T +VT H+HL TH + + +S ++ C+T Sbjct: 467 WTHKDLT---IVTWTHKHLTIVTWTHKHLTIKQSDFAIKQCNT 506 >SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12) Length = 515 Score = 27.1 bits (57), Expect = 6.6 Identities = 12/34 (35%), Positives = 23/34 (67%) Frame = +3 Query: 252 CFRFEGWSSRCNYTETLELISQGGWRIYVVDVYG 353 CFR+ SS C+Y++ + + + GG+ Y+ ++YG Sbjct: 78 CFRY---SSCCDYSQNVNVRNCGGF--YIYEIYG 106 >SB_21607| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 259 Score = 26.6 bits (56), Expect = 8.7 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = -1 Query: 303 PRSQYSYNGCSTLQTESITASRQK*AGWCYLSVRT 199 PRS Y+Y + LQT+ A K G + + T Sbjct: 84 PRSAYTYTNTNILQTQDTQAREHKNCGMVHRGMST 118 >SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1375 Score = 26.6 bits (56), Expect = 8.7 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 228 PISAVKQ*CFRFEGWSSRCNYTETLELI 311 P++ V F +E +SSRC Y E +E+I Sbjct: 742 PLAVVDGLKFVYENYSSRCWYWEIVEMI 769 >SB_51377| Best HMM Match : IL8 (HMM E-Value=10) Length = 123 Score = 26.6 bits (56), Expect = 8.7 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%) Frame = +3 Query: 3 GYDVR--CIRVERSTGVRISGRYEFFYEIRTQ 92 GY +R C R+++S GV +GRY F IR Q Sbjct: 94 GYSLRGGCSRLDKSVGV--TGRYNNFITIRFQ 123 >SB_13856| Best HMM Match : CXC (HMM E-Value=0.021) Length = 464 Score = 26.6 bits (56), Expect = 8.7 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%) Frame = +3 Query: 3 GYDVR--CIRVERSTGVRISGRYEFFYEIRTQ 92 GY +R C R+++S GV +GRY F IR Q Sbjct: 435 GYSLRGGCSRLDKSVGV--TGRYNNFITIRFQ 464 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,053,262 Number of Sequences: 59808 Number of extensions: 285767 Number of successful extensions: 540 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 513 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 540 length of database: 16,821,457 effective HSP length: 75 effective length of database: 12,335,857 effective search space used: 826502419 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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