Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1061
         (429 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL354836-5|CAC22310.1| 3690|Homo sapiens laminin, alpha 5 protein.     31   2.2  
AB067494-1|BAB67800.1| 1737|Homo sapiens KIAA1907 protein protein.     31   2.2  
BC117698-1|AAI17699.1| 1358|Homo sapiens NWD1 protein protein.         29   5.1  
AF443072-1|AAM12527.1| 3695|Homo sapiens laminin alpha5 chain pr...    29   5.1  

>AL354836-5|CAC22310.1| 3690|Homo sapiens laminin, alpha 5 protein.
          Length = 3690

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = -2

Query: 389  ALSPPGVKWLLEPIDIYNVNAPPTLRYKFQGLSIVTTAAPPFKPKALLLHGRNRQGGVTY 210
            A+SP G +    P    + +A PTL  + Q   + TT  P     A LLHG  +    T+
Sbjct: 1257 AMSPAGPR--PRPPTAVDPDAEPTLLREPQATVVFTTHVPTLGRYAFLLHG-YQPAHPTF 1313

Query: 209  PCE--LTRGPTTSNYANYNF 156
            P E  +  G     +AN +F
Sbjct: 1314 PVEVLINAGRVWQGHANASF 1333


>AB067494-1|BAB67800.1| 1737|Homo sapiens KIAA1907 protein protein.
          Length = 1737

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = -2

Query: 389  ALSPPGVKWLLEPIDIYNVNAPPTLRYKFQGLSIVTTAAPPFKPKALLLHGRNRQGGVTY 210
            A+SP G +    P    + +A PTL  + Q   + TT  P     A LLHG  +    T+
Sbjct: 1060 AMSPAGPR--PRPPTAVDPDAEPTLLREPQATVVFTTHVPTLGRYAFLLHG-YQPAHPTF 1116

Query: 209  PCE--LTRGPTTSNYANYNF 156
            P E  +  G     +AN +F
Sbjct: 1117 PVEVLINAGRVWQGHANASF 1136


>BC117698-1|AAI17699.1| 1358|Homo sapiens NWD1 protein protein.
          Length = 1358

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -3

Query: 277 LLHPSNRKHYCFTAEIGRVVLPIRANSQEVLPLVITQIIILRV*FLLHDVIPSLWKS 107
           L++P N+ H C+  E+G   + +RAN Q +  L         + +L  ++   LW+S
Sbjct: 44  LVNPKNKTHACYLKELGEQFV-VRANHQVLTRLRELDTAGQELAWLYQEIRHHLWQS 99


>AF443072-1|AAM12527.1| 3695|Homo sapiens laminin alpha5 chain
            precursor protein.
          Length = 3695

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = -2

Query: 389  ALSPPGVKWLLEPIDIYNVNAPPTLRYKFQGLSIVTTAAPPFKPKALLLHGRNRQGGVTY 210
            A SP G +    P    + +A PTL  + Q   + TT  P     A LLHG  +    T+
Sbjct: 1257 ATSPAGPR--PRPPTAVDPDAEPTLLREPQATVVFTTHVPTLGRYAFLLHG-YQPAHPTF 1313

Query: 209  PCE--LTRGPTTSNYANYNF 156
            P E  +  G     +AN +F
Sbjct: 1314 PVEVLINAGRVWQGHANASF 1333


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,003,800
Number of Sequences: 237096
Number of extensions: 1440777
Number of successful extensions: 2050
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2050
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)