Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1061
         (429 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075185-1|AAL68055.1|  290|Drosophila melanogaster AT13107p pro...    30   1.5  
AE014134-1599|AAF52741.1|  290|Drosophila melanogaster CG9573-PA...    30   1.5  
AF061268-1|AAC67389.1|  641|Drosophila melanogaster transferrin ...    27   8.1  
AE013599-2105|AAM70962.2|  266|Drosophila melanogaster CG30083-P...    27   8.1  

>AY075185-1|AAL68055.1|  290|Drosophila melanogaster AT13107p
           protein.
          Length = 290

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 133 DVIPSLWKSILNVC*VRIS*KNSYLPEIRTPVDRSTRMHRTSY 5
           D+ P LWKS+   C +     N Y P I TPV ++ + +R  Y
Sbjct: 47  DLAPMLWKSVGTTCTLLQEIVNIY-PIITTPVLKANQSNRVCY 88


>AE014134-1599|AAF52741.1|  290|Drosophila melanogaster CG9573-PA
           protein.
          Length = 290

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 133 DVIPSLWKSILNVC*VRIS*KNSYLPEIRTPVDRSTRMHRTSY 5
           D+ P LWKS+   C +     N Y P I TPV ++ + +R  Y
Sbjct: 47  DLAPMLWKSVGTTCTLLQEIVNIY-PIITTPVLKANQSNRVCY 88


>AF061268-1|AAC67389.1|  641|Drosophila melanogaster transferrin
           precursor protein.
          Length = 641

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +3

Query: 63  YEFFYEIRTQQTFNIDFHSEGITSCNKNQTRKIIICVITSGRTSCE--FARIGNTTLPIS 236
           Y    EIRTQQ  N  F  EGI    K+   + +  +   G  SC   F R     +PI+
Sbjct: 101 YRVISEIRTQQDKNAAFRYEGIILVKKDSPIRTLQQL--RGAKSCHTGFGRNVGYKIPIT 158

Query: 237 AVK 245
            +K
Sbjct: 159 KLK 161


>AE013599-2105|AAM70962.2|  266|Drosophila melanogaster CG30083-PA
           protein.
          Length = 266

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 371 VKWLLEPIDIYNVNAPPTLRYK 306
           + W+L  +D Y V +PP ++Y+
Sbjct: 239 IDWILMVVDNYTVRSPPKIQYR 260


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,444,553
Number of Sequences: 53049
Number of extensions: 422383
Number of successful extensions: 875
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1334434944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)