Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1061
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical ...    29   1.4  
Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AF043699-4|AAB97568.1|  610|Caenorhabditis elegans Serotonin/oct...    27   5.7  
AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical ...    26   10.0 

>AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical
           protein C10E2.2 protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 18/73 (24%), Positives = 28/73 (38%)
 Frame = +3

Query: 117 SEGITSCNKNQTRKIIICVITSGRTSCEFARIGNTTLPISAVKQ*CFRFEGWSSRCNYTE 296
           SE I    K  T   + C+ T  R+      +   T  I  +     R   WSS C++T 
Sbjct: 256 SENIREIQKGGTLYTLKCLKTVRRSEYGVHCLSQHTETIDIMNDIVLRCPNWSSGCDFTS 315

Query: 297 TLELISQGGWRIY 335
           T   +  G  + +
Sbjct: 316 TRVKVKVGNLKFH 328


>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 383 SPPGVKWLLEPIDIYNVNAPPTLRYKFQGLSIVTTAAPP 267
           +P   K  + P  +    APPT+R      ++ TT APP
Sbjct: 3   TPVSTKKTIAPSTMKTTVAPPTMRTTMAPTTMKTTVAPP 41


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -2

Query: 332 NAPPTLRYKFQGLSIVTTAAPPFKPKALLLHGRNRQGGVT 213
           NA    R +      +T   PPF+ K L+ H     GG T
Sbjct: 293 NAEKLARCQVDTFQRITRDLPPFRNKVLIFHSAPSCGGTT 332


>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical protein
            T01H10.8 protein.
          Length = 2692

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +3

Query: 108  DFHSEGITSCNKNQTRKIIICVITSGRTSCEFARIGNTTLPISAVKQ*CFRFEGWSSRCN 287
            D H  GI+S N  +TRK ++   T GR      ++ ++ +PI   +Q   +    S    
Sbjct: 907  DVHELGISSKNLEKTRKFVLS--TKGR-KLNIGQMFHSVIPIRHNQQLSVK----SEEAG 959

Query: 288  YTETLELISQGG 323
            +T T+E +   G
Sbjct: 960  FTSTVEQLRAAG 971


>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical protein
            T01H10.8 protein.
          Length = 2692

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +3

Query: 108  DFHSEGITSCNKNQTRKIIICVITSGRTSCEFARIGNTTLPISAVKQ*CFRFEGWSSRCN 287
            D H  GI+S N  +TRK ++   T GR      ++ ++ +PI   +Q   +    S    
Sbjct: 907  DVHELGISSKNLEKTRKFVLS--TKGR-KLNIGQMFHSVIPIRHNQQLSVK----SEEAG 959

Query: 288  YTETLELISQGG 323
            +T T+E +   G
Sbjct: 960  FTSTVEQLRAAG 971


>AF043699-4|AAB97568.1|  610|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 3 protein.
          Length = 610

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -3

Query: 247 CFTAEIGRVVLPIRANSQEVLPLVITQIIILRV*FLLHDVIPSLWKSILNV 95
           C  A  GRV +   A+S   +P++I   +  R+         S++  +++V
Sbjct: 210 CTPANAGRVYVVFSASSSFYIPMIIVVFVYFRIYVAARAATKSIYSGMMSV 260


>AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical
            protein Y39A1B.2 protein.
          Length = 1003

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 371  VKWLLEPIDIYNVNAPPTLRYKFQGLSIVTTAAPPF-KPKALLLHGRNRQGGVTYPCE 201
            +++L  P D+Y +  PP++ Y    L    T + P   P AL    +    G++ P E
Sbjct: 891  IQFLSNP-DLYTMPPPPSVEYSLSTLEFNRTQSRPLGAPPALTGSPKRELSGLSGPPE 947


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,365,540
Number of Sequences: 27780
Number of extensions: 213011
Number of successful extensions: 444
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)