Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1061
         (429 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36610.1 68417.m05196 hydrolase, alpha/beta fold family prote...    27   4.1  
At5g20770.1 68418.m02468 hypothetical protein                          26   9.4  
At5g18890.1 68418.m02244 inosine-uridine preferring nucleoside h...    26   9.4  
At4g14650.1 68417.m02253 expressed protein                             26   9.4  
At1g78200.2 68414.m09113 protein phosphatase 2C, putative / PP2C...    26   9.4  
At1g78200.1 68414.m09112 protein phosphatase 2C, putative / PP2C...    26   9.4  

>At4g36610.1 68417.m05196 hydrolase, alpha/beta fold family protein
           low similarity to
           2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
           [Pseudomonas fluorescens] GI:1871461; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 317

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = -2

Query: 359 LEPIDIYNVNAPPTLRYKFQGLSIVTTAAPPFKPKALLLHGRNRQGGVTYPCELTRGPTT 180
           +EP    N   P     K  G    T    P KP  LL+HG   +G VT+  ++  G  +
Sbjct: 28  IEPGTKINFWVPKETLKKNSGTGKPTKPDKPKKPVVLLIHGFAGEGIVTWQFQV--GALS 85

Query: 179 SNYANY 162
             Y+ Y
Sbjct: 86  KKYSVY 91


>At5g20770.1 68418.m02468 hypothetical protein
          Length = 231

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 6   YDVRCIRVERSTGVRISGRYEFFYEIRTQQTFNIDFHSEGI 128
           Y  RC    ++TGV++ GRY  F+E       N   + EG+
Sbjct: 63  YSFRC----QTTGVQMKGRYRDFFERCLNSGNNTAIYYEGL 99


>At5g18890.1 68418.m02244 inosine-uridine preferring nucleoside
           hydrolase family protein contains Pfam profile PF01156:
           Inosine-uridine preferring nucleoside hydrolase
          Length = 550

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +3

Query: 69  FFYEIRTQQTFNIDFHSEGITSCNKNQTRKIIICVITSGRTSCEFARIGNTTLPIS 236
           FFY+ RT + FN+     G+ S +  +  +  IC+ TSG+ +C       T+ P S
Sbjct: 44  FFYKRRTPK-FNLTLG--GVHSGHVQRGLRDPICISTSGKGNCRDGYTKETSGPDS 96


>At4g14650.1 68417.m02253 expressed protein
          Length = 644

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +3

Query: 21  IRVERSTGVRISGRYEFFYEIRTQQTFNIDF---HSEGITSCNK 143
           +++++ TG+      E F EI  Q+  N+D+   H E +T   K
Sbjct: 372 VKLDQETGIEQRRGREEFPEIEPQEILNLDYRIVHDEEVTDKGK 415


>At1g78200.2 68414.m09113 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase 2C GB:CAA72341
           [Medicago sativa]; contains Pfam profile: PF00481
           Protein phosphatase 2C
          Length = 283

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 239 GRNRQGGVTYPCELTRGPTTSNYANYNFA 153
           GRN +GG+ Y   L +G +  +  +Y+ A
Sbjct: 24  GRNGEGGIKYGFSLIKGKSNHSMEDYHVA 52


>At1g78200.1 68414.m09112 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase 2C GB:CAA72341
           [Medicago sativa]; contains Pfam profile: PF00481
           Protein phosphatase 2C
          Length = 283

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 239 GRNRQGGVTYPCELTRGPTTSNYANYNFA 153
           GRN +GG+ Y   L +G +  +  +Y+ A
Sbjct: 24  GRNGEGGIKYGFSLIKGKSNHSMEDYHVA 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,735,561
Number of Sequences: 28952
Number of extensions: 197539
Number of successful extensions: 438
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)