Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1060
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    23   1.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   4.9  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   8.6  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   8.6  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.6  
AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    21   8.6  

>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 632 VLGNAIYSYRTGTQRIYSRLEIRNKLRCLSH 540
           V GNA+Y      + IY +++ R K + +SH
Sbjct: 99  VTGNALYQVFVFRRSIYLQIKERLKTQGISH 129


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 43  TVDEMPGSLHPLEERHRYPQQIP 111
           T+DE    +H    R R P++IP
Sbjct: 643 TIDEAASDVHQTHMRIRPPKKIP 665


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 43  TVDEMPGSLHPLEERHRYPQQIP 111
           T+DE    +H    R R P++IP
Sbjct: 643 TIDEAASDVHQTHMRIRPPKKIP 665


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 43  TVDEMPGSLHPLEERHRYPQQIP 111
           T+DE    +H    R R P++IP
Sbjct: 643 TIDEAASDVHQTHMRIRPPKKIP 665


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 43  TVDEMPGSLHPLEERHRYPQQIP 111
           T+DE    +H    R R P++IP
Sbjct: 643 TIDEAASDVHQTHMRIRPPKKIP 665


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 147 KTFTNSLTGSPV 182
           KTF ++LTG+PV
Sbjct: 141 KTFKSTLTGTPV 152


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 252 CCLARCSCLHRVRDL*SSC 196
           CCL  CS   R +   SSC
Sbjct: 191 CCLRTCSSAKRPKFENSSC 209


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 298 GFRYLRNGTAGVHTK 342
           GFRYL N     H+K
Sbjct: 134 GFRYLVNDELSAHSK 148


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 298 GFRYLRNGTAGVHTK 342
           GFRYL N     H+K
Sbjct: 448 GFRYLVNDELSAHSK 462


>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 124

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 153 TFLKSFPQNLYHNEWY 106
           TFL  F   ++HNE Y
Sbjct: 83  TFLSLFIYGMHHNEKY 98


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,260
Number of Sequences: 336
Number of extensions: 3235
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)