Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1060
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    31   0.14 
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    30   0.25 
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    28   1.3  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    28   1.3  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    28   1.3  
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   1.7  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    27   2.3  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    27   2.3  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    27   3.0  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    26   5.3  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   7.0  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    25   7.0  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    25   9.3  

>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
 Frame = +2

Query: 5   EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGK--DFKNVYKFA-HRL 175
           +IL  I T+L  K +    E C     V D      ++W++FC +     NV        
Sbjct: 12  DILLEISTYLDYKDIVHLSETCKSLSYVFDD----KTIWHRFCARVQGLTNVVPVVDDNY 67

Query: 176 SRPQITWHELYRSLTLWRQLHLARQHSTNSRQQPR-WPAKSRASDIYET 319
            RP   W +   + +  +Q+        N+ Q PR  P      D+  T
Sbjct: 68  KRPYAVWKDRGYAYSWGQQIRNYLGRVVNTNQYPRDRPGALTGKDVRST 116


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 17/75 (22%), Positives = 34/75 (45%)
 Frame = +2

Query: 5   EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSRP 184
           E L H+   L A  L     V   W +++   + +H+L+    G   K++ +   R+ + 
Sbjct: 17  ETLLHVLNDLSAHDLAALERVSRSWNSIVRRSSVWHNLYLSEFGT--KHLRRHG-RIEKK 73

Query: 185 QITWHELYRSLTLWR 229
           +  W  L+R  + W+
Sbjct: 74  RRNWKGLFRRQSNWK 88


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 214 RPVELVPSDLRTGEPVSEFVNVFKVL 137
           +PV  +PS L  GE +S F N  K+L
Sbjct: 853 QPVNTIPSSLSLGEQLSAFNNFMKLL 878


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 5   EILSHIFTFLPAKQLTKCREVCIRWKNVI-DTLNKYHSLWYKFCG 136
           EIL  IF+FL  + L   +  C  WK ++ D L+   + ++ F G
Sbjct: 37  EILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRTAFFHHFAG 81


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/39 (30%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = -3

Query: 289  RWPPWLLTRIRRVLSSEVQL-PPQSQRPVELVPSDLRTG 176
            RWP  L   ++R++ + +Q+   ++++P +L+PSD+  G
Sbjct: 956  RWP--LPVNVQRIIQNALQIFHLEAKKPTDLLPSDIING 992


>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 509 SISHDNCKLFYVIDNVVYYVSLNES 583
           S S+D+C  +Y+I N+ +Y  + +S
Sbjct: 7   SKSYDDCSRYYIISNMAFYFPVYDS 31


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 250 LSSEVQLPPQSQRPVELVPSDLRTGEP 170
           L++E ++PPQ  +P   VPS + T  P
Sbjct: 302 LNNEKRIPPQLAQPTSHVPSFIDTNSP 328


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 5   EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLW 121
           E+   +F++L    L KC+ +  RWK +++    + +L+
Sbjct: 79  EVSLRVFSYLDQLDLCKCKLMSKRWKRLLEDPGIWKALY 117


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 5   EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDF 145
           E+L  I   L  K + +C +VC  W+   D + K  SL   FC  DF
Sbjct: 142 EVLLCILQQLNFKSIVQCMQVCKHWR---DCIKKEPSL---FCCLDF 182


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 413 PLCRNRRHSTPDE*QSTFVHNKKTN 487
           P   N+ H+   E +++  HNKKTN
Sbjct: 6   PNLNNKEHNRASEKKNSRTHNKKTN 30


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 200  ELYRSLTLWRQLHLARQHSTNSRQQPRWPAKSRAS 304
            E Y+S  +WR+     Q +TNS    R  A+  AS
Sbjct: 964  EAYKSAGMWRECLSILQQTTNSEDLIRETAEDLAS 998


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 408 YNRYVETDDTVLLMNSNLHLFITRKLIRS 494
           Y R  +T D  + +N N+HL +   +  S
Sbjct: 724 YERKTQTGDDYIALNHNVHLHLANMIFES 752


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 20  IFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYK 127
           IFT +    L  CR VC +++ + D    Y+S++ K
Sbjct: 41  IFTLISTPDLCNCRLVCRKFQQLCD----YNSIYVK 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,535
Number of Sequences: 5004
Number of extensions: 53962
Number of successful extensions: 176
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)