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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1060
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41941| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_6560| Best HMM Match : F-box (HMM E-Value=2e-10)                    38   0.009
SB_20853| Best HMM Match : F-box (HMM E-Value=1.1e-05)                 32   0.34 
SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_22037| Best HMM Match : Xan_ur_permease (HMM E-Value=2e-07)         31   0.60 
SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09)                 26   1.4  
SB_40708| Best HMM Match : SRCR (HMM E-Value=0)                        30   1.4  
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_49878| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)                 29   3.2  
SB_26957| Best HMM Match : PDZ (HMM E-Value=0)                         29   3.2  
SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)                   29   4.2  
SB_55795| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-08)                 29   4.2  
SB_38076| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)                 29   4.2  
SB_7037| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_7673| Best HMM Match : DUF805 (HMM E-Value=2.3)                     28   5.6  
SB_34912| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_42988| Best HMM Match : Pox_D3 (HMM E-Value=2.2)                    27   9.8  
SB_41663| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_22599| Best HMM Match : UME (HMM E-Value=4.4)                       27   9.8  
SB_17170| Best HMM Match : RVT_1 (HMM E-Value=0.0023)                  27   9.8  
SB_16966| Best HMM Match : DUF598 (HMM E-Value=0.00017)                27   9.8  
SB_11511| Best HMM Match : RVT_1 (HMM E-Value=0.79)                    27   9.8  
SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.8  
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)                 27   9.8  
SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_27013| Best HMM Match : UME (HMM E-Value=4.4)                       27   9.8  
SB_20271| Best HMM Match : UME (HMM E-Value=8.1)                       27   9.8  
SB_17450| Best HMM Match : RVT_1 (HMM E-Value=2.2e-25)                 27   9.8  
SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11)                  27   9.8  

>SB_41941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 24/76 (31%), Positives = 38/76 (50%)
 Frame = +2

Query: 2   TEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSR 181
           TEIL  IF+ L A+ + +    C R   +   L     LW + C +D    Y+ A     
Sbjct: 26  TEILLFIFSLLDARSIVRASRACTR---LHFALKYCDPLWRRLCRRD----YELALSFRA 78

Query: 182 PQITWHELYRSLTLWR 229
           P  T++++YRSL++ R
Sbjct: 79  PFDTYYDIYRSLSMSR 94


>SB_6560| Best HMM Match : F-box (HMM E-Value=2e-10)
          Length = 216

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 23/72 (31%), Positives = 37/72 (51%)
 Frame = +2

Query: 2   TEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSR 181
           T++L HIF+ L A+ L  C +VC +W  V    + +  L ++ C K  +N+      L R
Sbjct: 6   TDVLLHIFSHLDAQSLCSCSQVCKQWYEVSTISSLWKMLVFQQCRK--RNI---RPHLGR 60

Query: 182 PQITWHELYRSL 217
            + TW E +  L
Sbjct: 61  AE-TWKERFFQL 71


>SB_20853| Best HMM Match : F-box (HMM E-Value=1.1e-05)
          Length = 637

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +2

Query: 5   EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSRP 184
           EIL  IF +  A  LTK   VC +W    ++++K  SLW +   + +++       +   
Sbjct: 7   EILLQIFRYFDAFILTKICSVCKQW----NSISKTPSLWRRLVLRRWQSQRFLFANVPPS 62

Query: 185 QITWHELYRSL 217
            + W ++Y+ +
Sbjct: 63  SVNWRKVYQEI 73


>SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 23/65 (35%), Positives = 31/65 (47%)
 Frame = +2

Query: 2   TEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSR 181
           +E+LS I ++LPAK L    E C R+K +    +   +LW   C K F      A R  R
Sbjct: 21  SEVLSIILSYLPAKTLLNLSETCRRFKELCFECD---TLWKDLC-KQFS-----ASRDLR 71

Query: 182 PQITW 196
           P   W
Sbjct: 72  PSKIW 76


>SB_22037| Best HMM Match : Xan_ur_permease (HMM E-Value=2e-07)
          Length = 445

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = -3

Query: 301 SPGFRWPPWLLTRIRRVLSSEVQLPPQSQRPVELVPSDLRTGEPVSEFVNVFKVLSAKL 125
           SP FR  PWL  R    + +  Q P  S +PV   PS  + G P      VF +L+  L
Sbjct: 77  SPVFRLFPWLYGRQSGKVLNARQFPIYSNKPVNCQPS--QWGTPTVSAAGVFGMLAGVL 133


>SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09)
          Length = 456

 Score = 26.2 bits (55), Expect(2) = 1.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 8   ILSHIFTFLPAKQLTKCREVCIRW 79
           ++  IF++L    L K  EVC RW
Sbjct: 53  VILKIFSYLSRADLLKAAEVCKRW 76



 Score = 22.6 bits (46), Expect(2) = 1.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 194 WHELYRSLTLWRQLHL 241
           WHEL    +LWR + L
Sbjct: 76  WHELSFDRSLWRNVDL 91


>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1976

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +3

Query: 354 VL*FGHATANKRAVIYGDYNRYVETDDTVLLMNSNLHLFITRKLIRSPKHIAVFLMII 527
           +L FG+ATA   A  +G        DD    + S L LF  R++I SP    ++ +II
Sbjct: 674 MLNFGNATAYHTAGYFGRGTGDTWLDDLECTVVSALSLFSRRRVISSPSVFRIYPIII 731


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 1/121 (0%)
 Frame = +2

Query: 227  RQLHLAR-QHSTNSRQQPRWPAKSRASDIYETERPASTLKPAWCIMIWTRYSEQTRSYLR 403
            R+ +L+R  + +  R        S  SD     + A  +KPAW     + + EQ      
Sbjct: 1231 REEYLSRVMNESRKRFADEHKRHSFHSDYMSRNKEAVLVKPAWSSSRSSLHDEQRSPPEE 1290

Query: 404  RLQPLCRNRRHSTPDE*QSTFVHNKKTNT*PQAHSSISHDNCKLFYVIDNVVYYVSLNES 583
            + + L   +R S  +E + +F    +T+   +  +S   +N + F   +   +     +S
Sbjct: 1291 QRESLNEEKRRSFQEENRRSFQEENRTSFEEENGTSFQEENRRSFQEENRTSFQKEKRDS 1350

Query: 584  I 586
            I
Sbjct: 1351 I 1351


>SB_49878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/76 (25%), Positives = 33/76 (43%)
 Frame = -3

Query: 376 VACPNHNTPRRL*CGRRPFRFVNI*SPGFRWPPWLLTRIRRVLSSEVQLPPQSQRPVELV 197
           ++CP H+ P  +  G +  +  NI  PG   P  +    ++     +  P  S      V
Sbjct: 105 ISCPGHSVPSIMSTGEQKAKGGNISCPGHSVPSMMSKGEQKAKGGNILCPGHS------V 158

Query: 196 PSDLRTGEPVSEFVNV 149
           PS + TGE  ++  N+
Sbjct: 159 PSMMNTGEQKAKGGNI 174



 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = -3

Query: 376 VACPNHNTPRRL*CGRRPFRFVNI*SPGFRWPPWLLTRIRRVLSSEVQLPPQSQRPVELV 197
           + CP H+ P  +  G +  +  NI  PG   P  + T  ++     +  P  S      V
Sbjct: 82  ILCPGHSVPSMMSTGEQKAKGGNISCPGHSVPSIMSTGEQKAKGGNISCPGHS------V 135

Query: 196 PSDLRTGEPVSEFVNV 149
           PS +  GE  ++  N+
Sbjct: 136 PSMMSKGEQKAKGGNI 151



 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/76 (25%), Positives = 33/76 (43%)
 Frame = -3

Query: 376 VACPNHNTPRRL*CGRRPFRFVNI*SPGFRWPPWLLTRIRRVLSSEVQLPPQSQRPVELV 197
           ++ P H+ P  +  G +  +  NI  PG   P  + T  ++     +  P  S      V
Sbjct: 59  ISSPCHSVPSMMSTGEQKAKGGNILCPGHSVPSMMSTGEQKAKGGNISCPGHS------V 112

Query: 196 PSDLRTGEPVSEFVNV 149
           PS + TGE  ++  N+
Sbjct: 113 PSIMSTGEQKAKGGNI 128


>SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)
          Length = 459

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 5   EILSHIFTFLPAKQLTKCREVCIRWKNVID 94
           E++S+IF+FLP   +     VC  W    D
Sbjct: 22  EVVSYIFSFLPLADIKSSARVCHLWAKASD 51


>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 1685

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +2

Query: 50  TKCREVCIRWKNVID--TLNKYHSLWYKFCGKDFK-NVYKFAHRLSRPQIT 193
           T+CREV I    V    +L KYH LW  F GK  K +  K  +   RP +T
Sbjct: 31  TRCREVGITLFTVSHRKSLWKYHELWPLFSGKLVKPHPSKLFYIPQRPYMT 81


>SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +2

Query: 137 KDFKNVYKFAHRLSRPQITWHELYRSLTLWRQLHLARQHSTNSRQ 271
           +DF+++  +        +   +    L +WR++HL R+H   SR+
Sbjct: 394 EDFEDITLYCKYYCLLDVGKQQRVGQLVVWREVHLTRRHKKESRK 438


>SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)
          Length = 1022

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/79 (22%), Positives = 34/79 (43%)
 Frame = +2

Query: 284 PAKSRASDIYETERPASTLKPAWCIMIWTRYSEQTRSYLRRLQPLCRNRRHSTPDE*QST 463
           P   R   + E   P+ +     C+ +++ YS+   +Y  R++P+   +    P+   + 
Sbjct: 491 PDPERLRPLRELPVPSDSKSLNRCLGLFSYYSQWIPAYSDRIKPITSCKVFPLPEPAVAA 550

Query: 464 FVHNKKTNT*PQAHSSISH 520
           F   KKT      H S+ H
Sbjct: 551 FESIKKTVEEAFLHESLCH 569


>SB_55795| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-08)
          Length = 363

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 75  AGRTSSIPSTNTIHCGISFAERTLKTFTNSLT 170
           +G TS  P+TNTI   +   E TL    N LT
Sbjct: 2   SGTTSGKPNTNTIAIAVFLGEGTLAAVANVLT 33


>SB_38076| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)
          Length = 577

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 75  AGRTSSIPSTNTIHCGISFAERTLKTFTNSLT 170
           +G TS  P+TNTI   +   E TL    N LT
Sbjct: 2   SGTTSGKPNTNTIAIAVFLGEGTLAAVANVLT 33


>SB_7037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 75  AGRTSSIPSTNTIHCGISFAERTLKTFTNSLT 170
           +G TS  P+TNTI   +   E TL    N LT
Sbjct: 2   SGTTSGKPNTNTIAIAVFLGEGTLAAVANVLT 33


>SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 5   EILSHIFTFLPA--KQLTKCREVCIRWKNVIDT 97
           E+++HIF+F      +L   R VC +WK +ID+
Sbjct: 7   EMIAHIFSFFHQIYGKLLLLRTVCRKWKIIIDS 39


>SB_7673| Best HMM Match : DUF805 (HMM E-Value=2.3)
          Length = 100

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 75  AGRTSSIPSTNTIHCGISFAERTLKTFTNSLT 170
           +G TS  P+TNTI   +   E TL    N LT
Sbjct: 2   SGTTSGKPNTNTIAIAVFLGEGTLGAVANVLT 33


>SB_34912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +2

Query: 38  AKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSRPQITWHELYRSL 217
           A+   KC ++   W+++I  +  Y+S     CG     +Y+    ++RP   +++  R L
Sbjct: 276 ARPYYKCTKLLQMWRDLITNVPSYYS-----CGATLLQMYQVITDVARP---YYKCTRLL 327

Query: 218 TLWRQL 235
             W  L
Sbjct: 328 QFWHDL 333


>SB_42988| Best HMM Match : Pox_D3 (HMM E-Value=2.2)
          Length = 336

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
           ++ Y+V  I++F     +  N   C  +R+SFL  N C L
Sbjct: 32  IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 71


>SB_41663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 5   EILSHIFTFLPAKQLTKCREVCIRW 79
           EIL+ IF++L  K L +  +VC  W
Sbjct: 118 EILNKIFSYLNPKDLCRTSQVCKSW 142


>SB_22599| Best HMM Match : UME (HMM E-Value=4.4)
          Length = 199

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
           ++ Y+V  I++F     +  N   C  +R+SFL  N C L
Sbjct: 32  IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 71


>SB_17170| Best HMM Match : RVT_1 (HMM E-Value=0.0023)
          Length = 391

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
           ++ Y+V  I++F     +  N   C  +R+SFL  N C L
Sbjct: 159 IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 198


>SB_16966| Best HMM Match : DUF598 (HMM E-Value=0.00017)
          Length = 377

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
           ++ Y+V  I++F     +  N   C  +R+SFL  N C L
Sbjct: 130 IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 169


>SB_11511| Best HMM Match : RVT_1 (HMM E-Value=0.79)
          Length = 289

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
           ++ Y+V  I++F     +  N   C  +R+SFL  N C L
Sbjct: 122 IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 161


>SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 455 QSTFVHNKKTNT*PQAHSSISHDNCKLFYVIDNVVYYVSLNESIYA 592
           Q+  +  K TN  P A SSI   N    Y+++N V +++L +  ++
Sbjct: 33  QAKMLFRKLTNHSP-ARSSIESGNMMFHYILENSVCFLTLTDKPFS 77


>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1584

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 51  RNAGKFASAGRTSSIPSTNTIHCGISFAERTLKTFTNSLTGS 176
           RN G     G   S P TN++  G+S     LK++T S T +
Sbjct: 162 RNHGN-TFTGYPRSYPRTNSVLAGVSSPGDALKSYTQSYTNN 202


>SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)
          Length = 299

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
           ++ Y+V  I++F     +  N   C  +R+SFL  N C L
Sbjct: 184 IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 223


>SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1019

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
           ++ Y+V  I++F     +  N   C  +R+SFL  N C L
Sbjct: 794 IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 833


>SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 455 QSTFVHNKKTNT*PQAHSSISHDNCKLFYVIDNVVYYVSLNESIYA 592
           Q+  +  K TN  P A SSI   N    Y+++N V +++L +  ++
Sbjct: 33  QAKMLFRKLTNHSP-ARSSIESGNMMFHYILENSVCFLTLTDKPFS 77


>SB_27013| Best HMM Match : UME (HMM E-Value=4.4)
          Length = 199

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
           ++ Y+V  I++F     +  N   C  +R+SFL  N C L
Sbjct: 32  IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 71


>SB_20271| Best HMM Match : UME (HMM E-Value=8.1)
          Length = 335

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
           ++ Y+V  I++F     +  N   C  +R+SFL  N C L
Sbjct: 32  IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 71


>SB_17450| Best HMM Match : RVT_1 (HMM E-Value=2.2e-25)
          Length = 472

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
           ++ Y+V  I++F     +  N   C  +R+SFL  N C L
Sbjct: 247 IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 286


>SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11)
          Length = 130

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 8   ILSHIFTFLPAKQLTKCREVCIRWKNV 88
           +L  +F+FL  + L K   VC RW+++
Sbjct: 33  VLLQVFSFLCQRSLCKLALVCKRWRDI 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,873,677
Number of Sequences: 59808
Number of extensions: 409156
Number of successful extensions: 1211
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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