Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1060
(642 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41941| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_6560| Best HMM Match : F-box (HMM E-Value=2e-10) 38 0.009
SB_20853| Best HMM Match : F-box (HMM E-Value=1.1e-05) 32 0.34
SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_22037| Best HMM Match : Xan_ur_permease (HMM E-Value=2e-07) 31 0.60
SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09) 26 1.4
SB_40708| Best HMM Match : SRCR (HMM E-Value=0) 30 1.4
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_49878| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11) 29 3.2
SB_26957| Best HMM Match : PDZ (HMM E-Value=0) 29 3.2
SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36) 29 4.2
SB_55795| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-08) 29 4.2
SB_38076| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05) 29 4.2
SB_7037| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_7673| Best HMM Match : DUF805 (HMM E-Value=2.3) 28 5.6
SB_34912| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_42988| Best HMM Match : Pox_D3 (HMM E-Value=2.2) 27 9.8
SB_41663| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_22599| Best HMM Match : UME (HMM E-Value=4.4) 27 9.8
SB_17170| Best HMM Match : RVT_1 (HMM E-Value=0.0023) 27 9.8
SB_16966| Best HMM Match : DUF598 (HMM E-Value=0.00017) 27 9.8
SB_11511| Best HMM Match : RVT_1 (HMM E-Value=0.79) 27 9.8
SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06) 27 9.8
SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_27013| Best HMM Match : UME (HMM E-Value=4.4) 27 9.8
SB_20271| Best HMM Match : UME (HMM E-Value=8.1) 27 9.8
SB_17450| Best HMM Match : RVT_1 (HMM E-Value=2.2e-25) 27 9.8
SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11) 27 9.8
>SB_41941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/76 (31%), Positives = 38/76 (50%)
Frame = +2
Query: 2 TEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSR 181
TEIL IF+ L A+ + + C R + L LW + C +D Y+ A
Sbjct: 26 TEILLFIFSLLDARSIVRASRACTR---LHFALKYCDPLWRRLCRRD----YELALSFRA 78
Query: 182 PQITWHELYRSLTLWR 229
P T++++YRSL++ R
Sbjct: 79 PFDTYYDIYRSLSMSR 94
>SB_6560| Best HMM Match : F-box (HMM E-Value=2e-10)
Length = 216
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +2
Query: 2 TEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSR 181
T++L HIF+ L A+ L C +VC +W V + + L ++ C K +N+ L R
Sbjct: 6 TDVLLHIFSHLDAQSLCSCSQVCKQWYEVSTISSLWKMLVFQQCRK--RNI---RPHLGR 60
Query: 182 PQITWHELYRSL 217
+ TW E + L
Sbjct: 61 AE-TWKERFFQL 71
>SB_20853| Best HMM Match : F-box (HMM E-Value=1.1e-05)
Length = 637
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSRP 184
EIL IF + A LTK VC +W ++++K SLW + + +++ +
Sbjct: 7 EILLQIFRYFDAFILTKICSVCKQW----NSISKTPSLWRRLVLRRWQSQRFLFANVPPS 62
Query: 185 QITWHELYRSL 217
+ W ++Y+ +
Sbjct: 63 SVNWRKVYQEI 73
>SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 31.9 bits (69), Expect = 0.46
Identities = 23/65 (35%), Positives = 31/65 (47%)
Frame = +2
Query: 2 TEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSR 181
+E+LS I ++LPAK L E C R+K + + +LW C K F A R R
Sbjct: 21 SEVLSIILSYLPAKTLLNLSETCRRFKELCFECD---TLWKDLC-KQFS-----ASRDLR 71
Query: 182 PQITW 196
P W
Sbjct: 72 PSKIW 76
>SB_22037| Best HMM Match : Xan_ur_permease (HMM E-Value=2e-07)
Length = 445
Score = 31.5 bits (68), Expect = 0.60
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = -3
Query: 301 SPGFRWPPWLLTRIRRVLSSEVQLPPQSQRPVELVPSDLRTGEPVSEFVNVFKVLSAKL 125
SP FR PWL R + + Q P S +PV PS + G P VF +L+ L
Sbjct: 77 SPVFRLFPWLYGRQSGKVLNARQFPIYSNKPVNCQPS--QWGTPTVSAAGVFGMLAGVL 133
>SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09)
Length = 456
Score = 26.2 bits (55), Expect(2) = 1.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 8 ILSHIFTFLPAKQLTKCREVCIRW 79
++ IF++L L K EVC RW
Sbjct: 53 VILKIFSYLSRADLLKAAEVCKRW 76
Score = 22.6 bits (46), Expect(2) = 1.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 194 WHELYRSLTLWRQLHL 241
WHEL +LWR + L
Sbjct: 76 WHELSFDRSLWRNVDL 91
>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1976
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +3
Query: 354 VL*FGHATANKRAVIYGDYNRYVETDDTVLLMNSNLHLFITRKLIRSPKHIAVFLMII 527
+L FG+ATA A +G DD + S L LF R++I SP ++ +II
Sbjct: 674 MLNFGNATAYHTAGYFGRGTGDTWLDDLECTVVSALSLFSRRRVISSPSVFRIYPIII 731
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 1/121 (0%)
Frame = +2
Query: 227 RQLHLAR-QHSTNSRQQPRWPAKSRASDIYETERPASTLKPAWCIMIWTRYSEQTRSYLR 403
R+ +L+R + + R S SD + A +KPAW + + EQ
Sbjct: 1231 REEYLSRVMNESRKRFADEHKRHSFHSDYMSRNKEAVLVKPAWSSSRSSLHDEQRSPPEE 1290
Query: 404 RLQPLCRNRRHSTPDE*QSTFVHNKKTNT*PQAHSSISHDNCKLFYVIDNVVYYVSLNES 583
+ + L +R S +E + +F +T+ + +S +N + F + + +S
Sbjct: 1291 QRESLNEEKRRSFQEENRRSFQEENRTSFEEENGTSFQEENRRSFQEENRTSFQKEKRDS 1350
Query: 584 I 586
I
Sbjct: 1351 I 1351
>SB_49878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = -3
Query: 376 VACPNHNTPRRL*CGRRPFRFVNI*SPGFRWPPWLLTRIRRVLSSEVQLPPQSQRPVELV 197
++CP H+ P + G + + NI PG P + ++ + P S V
Sbjct: 105 ISCPGHSVPSIMSTGEQKAKGGNISCPGHSVPSMMSKGEQKAKGGNILCPGHS------V 158
Query: 196 PSDLRTGEPVSEFVNV 149
PS + TGE ++ N+
Sbjct: 159 PSMMNTGEQKAKGGNI 174
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = -3
Query: 376 VACPNHNTPRRL*CGRRPFRFVNI*SPGFRWPPWLLTRIRRVLSSEVQLPPQSQRPVELV 197
+ CP H+ P + G + + NI PG P + T ++ + P S V
Sbjct: 82 ILCPGHSVPSMMSTGEQKAKGGNISCPGHSVPSIMSTGEQKAKGGNISCPGHS------V 135
Query: 196 PSDLRTGEPVSEFVNV 149
PS + GE ++ N+
Sbjct: 136 PSMMSKGEQKAKGGNI 151
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = -3
Query: 376 VACPNHNTPRRL*CGRRPFRFVNI*SPGFRWPPWLLTRIRRVLSSEVQLPPQSQRPVELV 197
++ P H+ P + G + + NI PG P + T ++ + P S V
Sbjct: 59 ISSPCHSVPSMMSTGEQKAKGGNILCPGHSVPSMMSTGEQKAKGGNISCPGHS------V 112
Query: 196 PSDLRTGEPVSEFVNV 149
PS + TGE ++ N+
Sbjct: 113 PSIMSTGEQKAKGGNI 128
>SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)
Length = 459
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKNVID 94
E++S+IF+FLP + VC W D
Sbjct: 22 EVVSYIFSFLPLADIKSSARVCHLWAKASD 51
>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
Length = 1685
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 50 TKCREVCIRWKNVID--TLNKYHSLWYKFCGKDFK-NVYKFAHRLSRPQIT 193
T+CREV I V +L KYH LW F GK K + K + RP +T
Sbjct: 31 TRCREVGITLFTVSHRKSLWKYHELWPLFSGKLVKPHPSKLFYIPQRPYMT 81
>SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +2
Query: 137 KDFKNVYKFAHRLSRPQITWHELYRSLTLWRQLHLARQHSTNSRQ 271
+DF+++ + + + L +WR++HL R+H SR+
Sbjct: 394 EDFEDITLYCKYYCLLDVGKQQRVGQLVVWREVHLTRRHKKESRK 438
>SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)
Length = 1022
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/79 (22%), Positives = 34/79 (43%)
Frame = +2
Query: 284 PAKSRASDIYETERPASTLKPAWCIMIWTRYSEQTRSYLRRLQPLCRNRRHSTPDE*QST 463
P R + E P+ + C+ +++ YS+ +Y R++P+ + P+ +
Sbjct: 491 PDPERLRPLRELPVPSDSKSLNRCLGLFSYYSQWIPAYSDRIKPITSCKVFPLPEPAVAA 550
Query: 464 FVHNKKTNT*PQAHSSISH 520
F KKT H S+ H
Sbjct: 551 FESIKKTVEEAFLHESLCH 569
>SB_55795| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-08)
Length = 363
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 75 AGRTSSIPSTNTIHCGISFAERTLKTFTNSLT 170
+G TS P+TNTI + E TL N LT
Sbjct: 2 SGTTSGKPNTNTIAIAVFLGEGTLAAVANVLT 33
>SB_38076| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)
Length = 577
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 75 AGRTSSIPSTNTIHCGISFAERTLKTFTNSLT 170
+G TS P+TNTI + E TL N LT
Sbjct: 2 SGTTSGKPNTNTIAIAVFLGEGTLAAVANVLT 33
>SB_7037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 75 AGRTSSIPSTNTIHCGISFAERTLKTFTNSLT 170
+G TS P+TNTI + E TL N LT
Sbjct: 2 SGTTSGKPNTNTIAIAVFLGEGTLAAVANVLT 33
>SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1088
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 5 EILSHIFTFLPA--KQLTKCREVCIRWKNVIDT 97
E+++HIF+F +L R VC +WK +ID+
Sbjct: 7 EMIAHIFSFFHQIYGKLLLLRTVCRKWKIIIDS 39
>SB_7673| Best HMM Match : DUF805 (HMM E-Value=2.3)
Length = 100
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 75 AGRTSSIPSTNTIHCGISFAERTLKTFTNSLT 170
+G TS P+TNTI + E TL N LT
Sbjct: 2 SGTTSGKPNTNTIAIAVFLGEGTLGAVANVLT 33
>SB_34912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 554
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +2
Query: 38 AKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSRPQITWHELYRSL 217
A+ KC ++ W+++I + Y+S CG +Y+ ++RP +++ R L
Sbjct: 276 ARPYYKCTKLLQMWRDLITNVPSYYS-----CGATLLQMYQVITDVARP---YYKCTRLL 327
Query: 218 TLWRQL 235
W L
Sbjct: 328 QFWHDL 333
>SB_42988| Best HMM Match : Pox_D3 (HMM E-Value=2.2)
Length = 336
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
++ Y+V I++F + N C +R+SFL N C L
Sbjct: 32 IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 71
>SB_41663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRW 79
EIL+ IF++L K L + +VC W
Sbjct: 118 EILNKIFSYLNPKDLCRTSQVCKSW 142
>SB_22599| Best HMM Match : UME (HMM E-Value=4.4)
Length = 199
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
++ Y+V I++F + N C +R+SFL N C L
Sbjct: 32 IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 71
>SB_17170| Best HMM Match : RVT_1 (HMM E-Value=0.0023)
Length = 391
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
++ Y+V I++F + N C +R+SFL N C L
Sbjct: 159 IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 198
>SB_16966| Best HMM Match : DUF598 (HMM E-Value=0.00017)
Length = 377
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
++ Y+V I++F + N C +R+SFL N C L
Sbjct: 130 IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 169
>SB_11511| Best HMM Match : RVT_1 (HMM E-Value=0.79)
Length = 289
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
++ Y+V I++F + N C +R+SFL N C L
Sbjct: 122 IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 161
>SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 455 QSTFVHNKKTNT*PQAHSSISHDNCKLFYVIDNVVYYVSLNESIYA 592
Q+ + K TN P A SSI N Y+++N V +++L + ++
Sbjct: 33 QAKMLFRKLTNHSP-ARSSIESGNMMFHYILENSVCFLTLTDKPFS 77
>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1584
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 51 RNAGKFASAGRTSSIPSTNTIHCGISFAERTLKTFTNSLTGS 176
RN G G S P TN++ G+S LK++T S T +
Sbjct: 162 RNHGN-TFTGYPRSYPRTNSVLAGVSSPGDALKSYTQSYTNN 202
>SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)
Length = 299
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
++ Y+V I++F + N C +R+SFL N C L
Sbjct: 184 IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 223
>SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
++ Y+V I++F + N C +R+SFL N C L
Sbjct: 794 IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 833
>SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 455 QSTFVHNKKTNT*PQAHSSISHDNCKLFYVIDNVVYYVSLNESIYA 592
Q+ + K TN P A SSI N Y+++N V +++L + ++
Sbjct: 33 QAKMLFRKLTNHSP-ARSSIESGNMMFHYILENSVCFLTLTDKPFS 77
>SB_27013| Best HMM Match : UME (HMM E-Value=4.4)
Length = 199
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
++ Y+V I++F + N C +R+SFL N C L
Sbjct: 32 IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 71
>SB_20271| Best HMM Match : UME (HMM E-Value=8.1)
Length = 335
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
++ Y+V I++F + N C +R+SFL N C L
Sbjct: 32 IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 71
>SB_17450| Best HMM Match : RVT_1 (HMM E-Value=2.2e-25)
Length = 472
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 565 VINYVVYHIKQFTI---IMRNTAMCLGLRISFLVMNKCRL 455
++ Y+V I++F + N C +R+SFL N C L
Sbjct: 247 IMRYIVSDIQEFASNNNMQLNPTKCKEMRVSFLHYNSCEL 286
>SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11)
Length = 130
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 8 ILSHIFTFLPAKQLTKCREVCIRWKNV 88
+L +F+FL + L K VC RW+++
Sbjct: 33 VLLQVFSFLCQRSLCKLALVCKRWRDI 59
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,873,677
Number of Sequences: 59808
Number of extensions: 409156
Number of successful extensions: 1211
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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