Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1060
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48809-2|CAA88747.1|  406|Caenorhabditis elegans Hypothetical pr...    33   0.13 
U13072-6|AAK31399.1|  327|Caenorhabditis elegans Hypothetical pr...    32   0.30 
AF039042-12|AAC48249.1|  352|Caenorhabditis elegans Hypothetical...    31   0.93 
U29613-3|AAC47062.2|  483|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U13875-10|AAA21159.1|  332|Caenorhabditis elegans F-box synaptic...    29   2.1  
AC006617-4|AAF39771.1|  291|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF038606-9|AAB92027.1|  152|Caenorhabditis elegans Hypothetical ...    28   4.9  
U55365-11|AAA98576.2|  357|Caenorhabditis elegans Hypothetical p...    28   6.5  
Z81492-9|CAB04026.2|  805|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U57054-2|AAL50324.1|  372|Caenorhabditis elegans Jun n-terminal ...    27   8.6  
U57054-1|AAA98724.2|  463|Caenorhabditis elegans Jun n-terminal ...    27   8.6  
U50199-5|AAA91265.1|  395|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AB024085-1|BAA82640.1|  463|Caenorhabditis elegans JNK-1 protein.      27   8.6  

>Z48809-2|CAA88747.1|  406|Caenorhabditis elegans Hypothetical
           protein T01E8.4 protein.
          Length = 406

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = +2

Query: 2   TEILSHIFTFLPAKQL-TKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLS 178
           +E+L H+FT+LP +QL T+   VC R+  +++  +K+ S   +   K      +  H   
Sbjct: 14  SELLCHLFTYLPQRQLITEIPLVCRRFNTILND-DKFWSRRIRTEQKVRLPDCELKHPEY 72

Query: 179 RPQITWHELYRSLTLWR 229
            P+ +++ ++R    WR
Sbjct: 73  EPKKSFYAMHRQRDRWR 89


>U13072-6|AAK31399.1|  327|Caenorhabditis elegans Hypothetical
           protein C07D10.1 protein.
          Length = 327

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 20  IFTFLPAKQLTKCREVCIRWKNVIDTLNKYHS 115
           +F  + A  L +CR VC +W + I  LN+Y S
Sbjct: 16  VFKSVDAATLQRCRRVCTKWNSEILRLNEYTS 47


>AF039042-12|AAC48249.1|  352|Caenorhabditis elegans Hypothetical
           protein ZK697.1 protein.
          Length = 352

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 144 KSFPQNLYHNEWYLLRVSMTFFQRMQTSRHFVNCFAGRKVKMCDN 10
           K FP +  HN W L+ +  +FF +  T    +  FA R  K  +N
Sbjct: 28  KFFPTSRCHNVWNLIFIHSSFFNKYSTMEFLI--FAARSYKEHEN 70


>U29613-3|AAC47062.2|  483|Caenorhabditis elegans Hypothetical
          protein K02A6.3a protein.
          Length = 483

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 5  EILSHIFTFLPAKQLTKCREVCIRWK 82
          E+L  IF  LP K   +C +VC +W+
Sbjct: 13 ELLEDIFQRLPVKNKGRCSQVCRQWQ 38


>U13875-10|AAA21159.1|  332|Caenorhabditis elegans F-box synaptic
           protein protein 1 protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 5   EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGK 139
           ++L+ IF +LP K L      C  W N +   +    +W    GK
Sbjct: 88  KVLNQIFQYLPLKDLRSAMLTCHSWNNALSMEDS--DIWQYLLGK 130


>AC006617-4|AAF39771.1|  291|Caenorhabditis elegans Hypothetical
           protein C39B5.7 protein.
          Length = 291

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 5   EILSHIFTFLPAKQLTKCREVCIRWKNVID-TLNKYHSLWYKFCGKDF 145
           EI   I + LPA  L  CR+VC   ++ +D + N  + + +  C  DF
Sbjct: 4   EISDEILSKLPAMDLLSCRKVCKSLRSAVDQSGNHLNRISFDIC-NDF 50


>AF038606-9|AAB92027.1|  152|Caenorhabditis elegans Hypothetical
           protein C04C3.7 protein.
          Length = 152

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +2

Query: 11  LSHIFTFLPAKQLTKCREVCIRWKNVIDTLNK--YHSLWYK---FCGKDFKNVYKFAHRL 175
           + HI +  PA  +    +  IRW N  +TLN     +L Y    FCG  +K  Y+   +L
Sbjct: 9   VDHIKSLFPAN-IPNSTDTFIRWNNAFNTLNMTFVGTLQYSIMIFCG--YKLYYEMEEKL 65

Query: 176 SRPQITWHELYRSL 217
           S       +L+R +
Sbjct: 66  SIISDDSRKLHRQI 79


>U55365-11|AAA98576.2|  357|Caenorhabditis elegans Hypothetical
           protein C12D5.10 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 193 SDLRTGEPVSEFVNVFKVLSAKLIP 119
           ++LR  EPVS+F   F  L AKL+P
Sbjct: 193 NELRCNEPVSQFSLQFVTLFAKLMP 217


>Z81492-9|CAB04026.2|  805|Caenorhabditis elegans Hypothetical
           protein E03H4.4 protein.
          Length = 805

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 40  ETVDEMPGSLHPLEERHRYPQQIPF 114
           ETVD M   LHP+   H  P +I +
Sbjct: 544 ETVDNMTSVLHPINYIHMNPSEISY 568


>U57054-2|AAL50324.1|  372|Caenorhabditis elegans Jun n-terminal
           kinase protein 1,isoform b protein.
          Length = 372

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +2

Query: 365 WTRYSEQT----RSYLRRLQPLCRNRRHSTP 445
           WTR  EQ     RS+L RLQP  RN   + P
Sbjct: 236 WTRIIEQLGTPDRSFLERLQPTVRNYVENRP 266


>U57054-1|AAA98724.2|  463|Caenorhabditis elegans Jun n-terminal
           kinase protein 1,isoform a protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +2

Query: 365 WTRYSEQT----RSYLRRLQPLCRNRRHSTP 445
           WTR  EQ     RS+L RLQP  RN   + P
Sbjct: 327 WTRIIEQLGTPDRSFLERLQPTVRNYVENRP 357


>U50199-5|AAA91265.1|  395|Caenorhabditis elegans Hypothetical
           protein T14F9.2 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +1

Query: 211 VSDSVEATAPR*TALDEFASATTVASEIQGFRY 309
           V DSV+  A     LD F S  TVA  + GFRY
Sbjct: 182 VPDSVKTFAKSELTLD-FTSLRTVARNVPGFRY 213


>AB024085-1|BAA82640.1|  463|Caenorhabditis elegans JNK-1 protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +2

Query: 365 WTRYSEQT----RSYLRRLQPLCRNRRHSTP 445
           WTR  EQ     RS+L RLQP  RN   + P
Sbjct: 327 WTRIIEQLGTPDRSFLERLQPTVRNYVENRP 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,656,427
Number of Sequences: 27780
Number of extensions: 306068
Number of successful extensions: 960
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)