Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1060
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   1.9  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   1.9  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   1.9  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.8  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 571 RYVINYVVYHIKQFTIIMRNT 509
           R VI+YV +HI Q+ I   N+
Sbjct: 119 RCVIDYVKFHITQYMISNANS 139


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 87  TFFQRMQTSRHFVNCFAGRKVKMCD 13
           TFF+    +     C+ GR  K+C+
Sbjct: 252 TFFESCGVADLIATCYGGRNRKICE 276


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 253 LDEFASATTVASEIQG-FRYLRNGTAGVHTKAGVVYYDLDTLQR 381
           L + A+      EI G F     GT G HT+A    YD+   +R
Sbjct: 286 LPKLAANRAKLEEIAGKFNLQVRGTRGEHTEAEGGIYDISNKRR 329


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 331 VHTKAGVVYYDLDTLQR 381
           V T AG+V Y  DT++R
Sbjct: 222 VTTVAGIVSYPFDTVRR 238


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 331 VHTKAGVVYYDLDTLQR 381
           V T AG+V Y  DT++R
Sbjct: 222 VTTVAGIVSYPFDTVRR 238


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 274 LLTRIRRVLSSEVQLPPQSQRPVELVP 194
           +L+ +R  LSS   + P  Q P   +P
Sbjct: 806 ILSPVREKLSSSQPMQPPQQNPYMFLP 832


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,811
Number of Sequences: 438
Number of extensions: 3849
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)