Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1060
(642 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39250.1 68418.m04754 F-box family protein ; similar to SKP... 34 0.092
At2g42720.1 68415.m05291 F-box family protein contains F-box dom... 31 0.49
At5g40050.1 68418.m04858 F-box family protein contains F-box dom... 31 0.65
At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2) iden... 30 1.1
At5g47300.1 68418.m05831 F-box family protein contains Pfam PF00... 30 1.5
At2g43260.1 68415.m05377 F-box family protein / S locus-related ... 30 1.5
At3g23950.1 68416.m03008 F-box family protein contains Pfam:PF00... 29 2.0
At1g51320.1 68414.m05771 F-box family protein (FBX11) contains F... 29 2.0
At1g51290.1 68414.m05768 F-box family protein (FBX10) contains P... 29 2.0
At1g19070.1 68414.m02373 F-box family protein similar to putativ... 29 2.6
At2g03610.1 68415.m00321 F-box family protein contains F-box dom... 29 3.5
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 28 4.6
At3g23880.1 68416.m03001 F-box family protein contains F-box dom... 28 4.6
At3g18330.1 68416.m02332 F-box family protein contains Pfam PF00... 28 4.6
At3g17270.1 68416.m02208 F-box family protein 28 4.6
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac... 28 4.6
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac... 28 4.6
At1g52650.1 68414.m05945 F-box family protein contains F-box dom... 28 4.6
At5g38396.1 68418.m04641 F-box family protein contains F-box dom... 28 6.1
At5g38390.1 68418.m04639 F-box family protein contains F-box dom... 27 8.0
At5g38386.1 68418.m04638 F-box family protein contains F-box dom... 27 8.0
At3g58950.1 68416.m06569 F-box family protein contains F-box dom... 27 8.0
At3g49960.1 68416.m05463 peroxidase, putative identical to perox... 27 8.0
At3g17480.1 68416.m02233 F-box family protein contains F-box dom... 27 8.0
>At5g39250.1 68418.m04754 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 252
Score = 33.9 bits (74), Expect = 0.092
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSRP 184
E+L ++F L + L C VC +W+++ + W C K + +V K R P
Sbjct: 5 EVLKNVFPLLEGEDLASCMGVCKQWRDIA----RDDFYWKCQCAKKWPSVCK---RHKPP 57
Query: 185 QITWHELYRSLT 220
T++++Y++ +
Sbjct: 58 TETYYKMYQTFS 69
>At2g42720.1 68415.m05291 F-box family protein contains F-box domain
Pfam:PF00646
Length = 443
Score = 31.5 bits (68), Expect = 0.49
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYH 112
EIL HI +FL K+ + RWKNV + H
Sbjct: 10 EILEHILSFLSTKEAALTSSLSTRWKNVFVFVPSLH 45
>At5g40050.1 68418.m04858 F-box family protein contains F-box domain
Pfam:PF00646
Length = 415
Score = 31.1 bits (67), Expect = 0.65
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLN 103
E+LSHI +FLP K+ + RW+ + +N
Sbjct: 22 ELLSHILSFLPTKRAASTSILSKRWRTLFPLMN 54
>At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2)
identical to SKP1 interacting partner 2 GI:10716949 from
[Arabidopsis thaliana]
Length = 527
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRW 79
E L+H+F FL A +C VC RW
Sbjct: 49 ECLAHVFQFLGAGDRKRCSLVCKRW 73
>At5g47300.1 68418.m05831 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain; similar to unknown protein
(emb|CAB62106.1)
Length = 416
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSRP 184
++L I +PA L + R C +W N+ + ++ KDF+N+ R+
Sbjct: 49 DLLEEILCRVPATSLKQLRSTCKQWNNLFNN-GRFTRKHLDKAPKDFQNLMLSDSRVFSM 107
Query: 185 QITWH 199
+++H
Sbjct: 108 SVSFH 112
>At2g43260.1 68415.m05377 F-box family protein / S locus-related
weak similarity to S locus F-box (SLF)-S2 protein
[Antirrhinum hispanicum] GI:13161526; contains TIGRFAM
TIGR01640: F-box protein interaction domain
Length = 420
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKNVIDT 97
E+L + LP K + KCR V +W++++++
Sbjct: 16 ELLEEVLLRLPTKSILKCRIVSKQWRSLLES 46
>At3g23950.1 68416.m03008 F-box family protein contains
Pfam:PF00646 F-box domain
Length = 418
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKNVIDT 97
E+ + LP K L + R +C WK VID+
Sbjct: 6 ELTFEVLVRLPLKSLARFRSMCKEWKLVIDS 36
>At1g51320.1 68414.m05771 F-box family protein (FBX11) contains
F-box domain PF:00646
Length = 375
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWY-----KFCGKDFKNVYKFAH 169
E++ I +P + L K R VC +W ++ D NK+ + + + + +Y A
Sbjct: 9 ELVEEILCRVPPQSLVKFRTVCKQWNSLFDD-NKFVNDHFVQSQPQLIFRTESKIYSVAV 67
Query: 170 RLSRPQITWHEL 205
P+I HEL
Sbjct: 68 NFKGPRIEVHEL 79
>At1g51290.1 68414.m05768 F-box family protein (FBX10) contains Pfam
F-box domain PF:00646; similar to F-box protein family,
AtFBX9 (GP:20197985) {Arabidopsis thaliana}
Length = 377
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKY---HSLWYK--FCGKDFKNVYKFAH 169
E++ I +P + L + R VC +W ++ D NK+ H + + F + +Y A
Sbjct: 9 ELVEEILYRVPPQSLARFRTVCKQWNSLFDD-NKFVNDHLVRSRPQFMFRTDSKMYSVAV 67
Query: 170 RLSRPQITWHEL 205
S P I HEL
Sbjct: 68 NFSGPWIEVHEL 79
>At1g19070.1 68414.m02373 F-box family protein similar to putative
non-LTR retroelement reverse transcriptase GI:3738337
from [Arabidopsis thaliana] ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 83
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYH 112
EI+ HI +FLP K+ + RW+N+ H
Sbjct: 10 EIICHILSFLPTKESALTSVLSKRWRNLFALTPNLH 45
>At2g03610.1 68415.m00321 F-box family protein contains F-box domain
Pfam:PF00646
Length = 216
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYK 160
++L I L + + + VC W +V T Y S W + G F YK
Sbjct: 28 DLLRPILESLSSIDFHRAKTVCSDWYSVWKTCKGYDSKWNQNSGSIFDMAYK 79
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 28.3 bits (60), Expect = 4.6
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKNVIDT 97
++L I +FLP + + VC RW ++ +
Sbjct: 46 DLLERILSFLPIASIFRAGTVCKRWNEIVSS 76
>At3g23880.1 68416.m03001 F-box family protein contains F-box domain
Pfam:PF00646
Length = 364
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKNVI 91
E++ I LP K LT+ + VC W+++I
Sbjct: 17 EMMEEILLRLPVKSLTRFKCVCSSWRSLI 45
>At3g18330.1 68416.m02332 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 376
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDF 145
E++ I +F+PA L + C W +I ++ Y K+F
Sbjct: 9 ELVEEILSFVPATYLKRLSATCKPWNRLIHNDKRFARKHYDNAAKEF 55
>At3g17270.1 68416.m02208 F-box family protein
Length = 134
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRW 79
E+ S I + +PAK L K + +C RW
Sbjct: 10 ELESEILSRVPAKSLAKWKTICKRW 34
>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 575
Score = 28.3 bits (60), Expect = 4.6
Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 6/178 (3%)
Frame = +2
Query: 125 KFCGKDFKNVYKFAHRLSRPQITWHELYRSLTLWRQLHLARQHSTNSRQQPRWPAKSRAS 304
K C + F+NVYK+ H+ ++ T ++ + +L S+ + PAKS A
Sbjct: 88 KKCKEKFENVYKY-HKRTKEGRTGKSEGKTYRFFEELEAFETLSSYQPEPESQPAKSSA- 145
Query: 305 DIYETERPASTLKPAWCIMIWTRYSEQTRSYLRR-----LQPLCRNRRHSTPDE*QST-F 466
T PA++ W I +E++ S L+ +QP+ N +T F
Sbjct: 146 --VITNAPATSSLIPW-ISSSNPSTEKSSSPLKHHHQVSVQPITTNPTFLAKQPSSTTPF 202
Query: 467 VHNKKTNT*PQAHSSISHDNCKLFYVIDNVVYYVSLNESIYAVYLSDKNKSHFLVQST 640
NT + IS+D +++NV + S + SD+ + H V+S+
Sbjct: 203 PFYSSNNTTTVSQPPISND------LMNNVSSLNLFSSSTSSSTASDEEEDHHQVKSS 254
>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 498
Score = 28.3 bits (60), Expect = 4.6
Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 6/178 (3%)
Frame = +2
Query: 125 KFCGKDFKNVYKFAHRLSRPQITWHELYRSLTLWRQLHLARQHSTNSRQQPRWPAKSRAS 304
K C + F+NVYK+ H+ ++ T ++ + +L S+ + PAKS A
Sbjct: 11 KKCKEKFENVYKY-HKRTKEGRTGKSEGKTYRFFEELEAFETLSSYQPEPESQPAKSSA- 68
Query: 305 DIYETERPASTLKPAWCIMIWTRYSEQTRSYLRR-----LQPLCRNRRHSTPDE*QST-F 466
T PA++ W I +E++ S L+ +QP+ N +T F
Sbjct: 69 --VITNAPATSSLIPW-ISSSNPSTEKSSSPLKHHHQVSVQPITTNPTFLAKQPSSTTPF 125
Query: 467 VHNKKTNT*PQAHSSISHDNCKLFYVIDNVVYYVSLNESIYAVYLSDKNKSHFLVQST 640
NT + IS+D +++NV + S + SD+ + H V+S+
Sbjct: 126 PFYSSNNTTTVSQPPISND------LMNNVSSLNLFSSSTSSSTASDEEEDHHQVKSS 177
>At1g52650.1 68414.m05945 F-box family protein contains F-box
domain Pfam:PF00646
Length = 465
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 8 ILSHIFTFLPAKQLTKCREVCIRWKNVI 91
+L +IF+FL K+ +C RW+N++
Sbjct: 11 VLCNIFSFLTTKEAALTSILCKRWRNLL 38
>At5g38396.1 68418.m04641 F-box family protein contains F-box domain
Pfam:PF00646
Length = 462
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYH 112
E++ HI +FL K+ + RW+N++ ++ H
Sbjct: 10 ELICHILSFLTTKEAALTSVLSKRWRNLLAFVSNLH 45
>At5g38390.1 68418.m04639 F-box family protein contains F-box
domain Pfam:PF00646
Length = 456
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKNVI 91
E+L HI +FL K+ + RW+N+I
Sbjct: 10 ELLCHILSFLTTKEAALTSVLSKRWRNLI 38
>At5g38386.1 68418.m04638 F-box family protein contains F-box
domain Pfam:PF00646
Length = 403
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKNVI 91
E+L HI +FL K+ + RW+N+I
Sbjct: 10 ELLCHIMSFLTTKEAALISVLSKRWRNLI 38
>At3g58950.1 68416.m06569 F-box family protein contains F-box
domain Pfam:PF00646
Length = 417
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKN 85
E+L HI +FL K+ V RW+N
Sbjct: 10 EVLCHILSFLTTKEAALASVVSKRWRN 36
>At3g49960.1 68416.m05463 peroxidase, putative identical to
peroxidase ATP21a [Arabidopsis thaliana]
gi|1546696|emb|CAA67339
Length = 329
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 98 LNKYHSLWYKFCGKDFKNVYKF 163
L+ H+L + CGK FK ++KF
Sbjct: 193 LSAAHTLGFAHCGKVFKRIHKF 214
>At3g17480.1 68416.m02233 F-box family protein contains F-box domain
Pfam:PF00646
Length = 373
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/83 (20%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Frame = +2
Query: 5 EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSRP 184
+++ I + +PA L + R C +W +++ ++ + K++ ++ + R+S
Sbjct: 14 DLVEDILSRVPATSLVRLRSTCKQWNAILND-RRFIKKHFDTAEKEYLDMLLRSLRVSSM 72
Query: 185 QITWHELY----RSLTLWRQLHL 241
+ H L+ S+ L R+L+L
Sbjct: 73 SVNLHGLHDNIDPSIELKRELNL 95
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,517,531
Number of Sequences: 28952
Number of extensions: 271522
Number of successful extensions: 880
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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