Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1059
         (552 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55426 Cluster: PREDICTED: similar to CG14482-PA...    44   0.002
UniRef50_UPI00005184F7 Cluster: PREDICTED: similar to CG14482-PA...    38   0.15 
UniRef50_Q500Y7 Cluster: RH56961p; n=3; Sophophora|Rep: RH56961p...    34   1.9  
UniRef50_Q17N95 Cluster: Ubiquinol cytochrome C oxidoreductase-s...    34   1.9  
UniRef50_Q5CRR2 Cluster: Putative uncharacterized protein; n=2; ...    33   3.3  
UniRef50_A6KZA2 Cluster: Phosphoglycerol transferase-like protei...    32   7.7  

>UniRef50_UPI0000D55426 Cluster: PREDICTED: similar to CG14482-PA;
           n=2; Endopterygota|Rep: PREDICTED: similar to CG14482-PA
           - Tribolium castaneum
          Length = 63

 Score = 44.0 bits (99), Expect = 0.002
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +3

Query: 33  VGKKHLEIXXXXXXXXXXXXXXXXXXXXYFTDWKVFVANIPYYNGKFK 176
           +GKKH+EI                    Y TDWK+ +  +PYYNGKFK
Sbjct: 14  IGKKHIEIASQWIGSAVAFGATAGVGITYATDWKLILQYMPYYNGKFK 61


>UniRef50_UPI00005184F7 Cluster: PREDICTED: similar to CG14482-PA;
           n=1; Apis mellifera|Rep: PREDICTED: similar to
           CG14482-PA - Apis mellifera
          Length = 51

 Score = 37.9 bits (84), Expect = 0.15
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +3

Query: 27  VRVGKKHLEIXXXXXXXXXXXXXXXXXXXXYFTDWKVFVANIPYYNGKFK 176
           +++GK+H EI                    + TDWKV    IP+Y  KFK
Sbjct: 1   MKIGKRHFEIATKWIPSLMVYTGAAGLAMVFVTDWKVIAGYIPFYGNKFK 50


>UniRef50_Q500Y7 Cluster: RH56961p; n=3; Sophophora|Rep: RH56961p -
           Drosophila melanogaster (Fruit fly)
          Length = 57

 Score = 34.3 bits (75), Expect = 1.9
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 36  GKKHLEIXXXXXXXXXXXXXXXXXXXXYFTDWKVFVANIPYYNGKFK 176
           GKKH EI                    Y+TDWK+ +  +P Y  KF+
Sbjct: 8   GKKHAEIASSFIRSGAGFGGAAGLAVLYYTDWKLVLQYVPIYGSKFE 54


>UniRef50_Q17N95 Cluster: Ubiquinol cytochrome C
           oxidoreductase-subunit 6.4kD-subunit, putative; n=1;
           Aedes aegypti|Rep: Ubiquinol cytochrome C
           oxidoreductase-subunit 6.4kD-subunit, putative - Aedes
           aegypti (Yellowfever mosquito)
          Length = 54

 Score = 34.3 bits (75), Expect = 1.9
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 117 YFTDWKVFVANIPYYNGKF 173
           Y TDW+V V  IP+Y GKF
Sbjct: 33  YLTDWRVIVTYIPFYGGKF 51


>UniRef50_Q5CRR2 Cluster: Putative uncharacterized protein; n=2;
           Cryptosporidium|Rep: Putative uncharacterized protein -
           Cryptosporidium parvum Iowa II
          Length = 710

 Score = 33.5 bits (73), Expect = 3.3
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 136 TFQSVKYRSVTKAAPPNPPAEDRNAVA-ISKCFLPTRTIFNSSW 8
           TF + K  S+    P N P  + N V+ IS C L    IFNS+W
Sbjct: 392 TFGNNKETSIKTPPPSNFPTNNSNCVSNISTCDLSYNAIFNSNW 435


>UniRef50_A6KZA2 Cluster: Phosphoglycerol transferase-like protein,
           alkaline phosphatase superfamily; n=3; Bacteroides|Rep:
           Phosphoglycerol transferase-like protein, alkaline
           phosphatase superfamily - Bacteroides vulgatus (strain
           ATCC 8482 / DSM 1447 / NCTC 11154)
          Length = 682

 Score = 32.3 bits (70), Expect = 7.7
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 393 TAICNYYSKLFI**VSVRINCKKNLSTSIINLDVPYTSYLFR 518
           TA+CNY+SK     +S+      +LS  I   ++PY SY F+
Sbjct: 105 TALCNYHSKWVFRFISIFFILFYSLSFIISAANIPYFSYFFK 146


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 506,550,666
Number of Sequences: 1657284
Number of extensions: 9152361
Number of successful extensions: 17129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17126
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36238783989
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)