Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1059
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   2.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.2  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   5.6  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   7.4  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    25   9.8  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   9.8  

>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 290 FMSIILSVP*QTNCKILDSLLVCVLPKLIIYG 385
           F  ++   P Q N K L SLL  +LP +  YG
Sbjct: 541 FRVLLTGTPLQNNLKELISLLAFILPHVFDYG 572


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 25   WFVWARNIWKSPP 63
            W VWA  +W +PP
Sbjct: 1129 WEVWAPRVWSNPP 1141


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 118 YRSVTKAAPPNPPAEDRNAVAISKCFLPTRTIFNSS 11
           Y+SV  AAPP PP++ R     +  + P +  F +S
Sbjct: 116 YQSVPSAAPP-PPSQQRYMPDSAVAYNPNQDQFGNS 150


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 290 FMSIILSVP*QTNCKILDSLLVCVLPKL 373
           F  +I   P Q N K L SLL  +LPK+
Sbjct: 566 FRLLITGTPLQNNLKELISLLAFMLPKV 593


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 142 TNTFQSVKYRSVTKAAPPNPPAEDRNAVAISKCFLPTRTIFNSSWYF 2
           TN+   +K  S TK+ P NP +E+ +   I + F  +  I  S + F
Sbjct: 60  TNSDNKIKKLSKTKSNPTNPKSEE-DPSQICQSFDESNIITPSKYLF 105


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 283 FQIYEYYFICTLTNQL*NLRFSLSMCTSKTYNLWRPLLLFVITILSCS 426
           F+ Y   F C     + NL F L +   KT++L    LLF +   +CS
Sbjct: 443 FETYNLIFPCN-QYWVFNLEFLLGIYQCKTFDLEDRALLFKLVEDACS 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,866
Number of Sequences: 5004
Number of extensions: 42748
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)