Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1059
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0746 - 19888479-19888622,19888739-19888867,19889061-198895...    31   0.81 
01_07_0114 + 41161923-41163251                                         27   10.0 

>09_04_0746 -
           19888479-19888622,19888739-19888867,19889061-19889548,
           19889666-19889843,19889920-19889991,19890993-19891193
          Length = 403

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -3

Query: 142 TNTFQSVKYRSVTKAAPPNPPAEDRNAVAISKCFLP 35
           TN FQS  + S T   PP PP  D + + +SK  LP
Sbjct: 41  TNPFQSAAFSSTTTGDPP-PPTMD-SPIKVSKIILP 74


>01_07_0114 + 41161923-41163251
          Length = 442

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 55  SPPHSCLQPEGSAVLLL*RSYISRTGKYSSQIYPITTESLRDS 183
           +PP  CL P     L+L  S +  TG+  +   P+    +RDS
Sbjct: 3   NPPIKCLLPPAIVSLVLLISCMVATGEQQAPYKPLVVPLVRDS 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,038,938
Number of Sequences: 37544
Number of extensions: 231101
Number of successful extensions: 544
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)