Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1059
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      30   1.3  
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    30   1.3  
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    30   1.3  
U34902-1|AAA97607.1|  393|Caenorhabditis elegans sma-3 protein.        28   5.1  
U00046-9|AAC47050.2|  393|Caenorhabditis elegans Small protein 3...    28   5.1  
U13645-9|AAM15545.1|  597|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U13645-8|AAM15544.1|  565|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 165 RCNRVYLRRILSSP*NIGALQKQHRRTLRLKTGMRWRFPNVSCPHE 28
           R N +YLR++L +  +  +L    RR++   +    +F N+ CP+E
Sbjct: 165 RKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNE 210


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 165 RCNRVYLRRILSSP*NIGALQKQHRRTLRLKTGMRWRFPNVSCPHE 28
           R N +YLR++L +  +  +L    RR++   +    +F N+ CP+E
Sbjct: 165 RKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNE 210


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 165 RCNRVYLRRILSSP*NIGALQKQHRRTLRLKTGMRWRFPNVSCPHE 28
           R N +YLR++L +  +  +L    RR++   +    +F N+ CP+E
Sbjct: 165 RKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNE 210


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 165 RCNRVYLRRILSSP*NIGALQKQHRRTLRLKTGMRWRFPNVSCPHE 28
           R N +YLR++L +  +  +L    RR++   +    +F N+ CP+E
Sbjct: 165 RKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNE 210


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 165 RCNRVYLRRILSSP*NIGALQKQHRRTLRLKTGMRWRFPNVSCPHE 28
           R N +YLR++L +  +  +L    RR++   +    +F N+ CP+E
Sbjct: 165 RKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNE 210


>U34902-1|AAA97607.1|  393|Caenorhabditis elegans sma-3 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 114 GALQKQHRRTLRLKTGMR-WRFPNVSCPHE 28
           G LQ  H++ L      R WR+P++S PHE
Sbjct: 74  GRLQVSHKKGLPHVIYCRVWRWPDISSPHE 103


>U00046-9|AAC47050.2|  393|Caenorhabditis elegans Small protein 3
           protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 114 GALQKQHRRTLRLKTGMR-WRFPNVSCPHE 28
           G LQ  H++ L      R WR+P++S PHE
Sbjct: 74  GRLQVSHKKGLPHVIYCRVWRWPDISSPHE 103


>U13645-9|AAM15545.1|  597|Caenorhabditis elegans Hypothetical
           protein C05D10.4b protein.
          Length = 597

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 130 QSVKYRSVTKAAPPNPPAEDRN 65
           QS+  R+V   APPNPP  +++
Sbjct: 162 QSINSRAVPPPAPPNPPKMEKH 183


>U13645-8|AAM15544.1|  565|Caenorhabditis elegans Hypothetical
           protein C05D10.4a protein.
          Length = 565

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 130 QSVKYRSVTKAAPPNPPAEDRN 65
           QS+  R+V   APPNPP  +++
Sbjct: 130 QSINSRAVPPPAPPNPPKMEKH 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,087,044
Number of Sequences: 27780
Number of extensions: 232303
Number of successful extensions: 421
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)