Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1059
         (552 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05280.1 68414.m00534 fringe-related protein Similar to hypot...    29   2.7  
At3g62730.1 68416.m07047 expressed protein DESSICATION-RELATED P...    28   4.8  

>At1g05280.1 68414.m00534 fringe-related protein Similar to
           hypothetical protein PID|e327464 (gb|Z97338) various
           hypothetical proteins from Arabidopsis thaliana strong
           similarity to unknown protein (pir||T13026) similarity
           to predicted proteins + similar to hypothetical protein
           GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
           Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 461

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 73  DRNAVAISKCFLPTRTIFNSS 11
           DRNA+ I++C L T  +FN+S
Sbjct: 142 DRNAIRIARCVLETVRLFNTS 162


>At3g62730.1 68416.m07047 expressed protein DESSICATION-RELATED
           PROTEIN PCC13-62 PRECURSOR - Craterostigma plantagineum,
           PIR:E45509
          Length = 317

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 280 KFQIYEYYFICTLTNQL*NLRFSLSMCTSKTYNLWRPLLL 399
           K + Y    +  LTN++ NLR  L MC  K   L  PL L
Sbjct: 205 KVEEYGGVTVAELTNEISNLRNELGMCGIKDEGLCVPLWL 244


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,046,673
Number of Sequences: 28952
Number of extensions: 202152
Number of successful extensions: 329
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)