Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1056
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    27   2.1  
SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   4.9  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    25   4.9  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    25   6.5  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   6.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   8.5  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   8.5  

>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 323 SAG-YAV*SPAHQISLRDSQIN-DNKKKYLHYIA*NKIAFSVPIPLCM 460
           SAG   V S   Q    D  IN +N K +  Y++ N+   S+P P+C+
Sbjct: 399 SAGNIGVISGIKQFHTGDIIINKENSKNFHEYLSGNQSVISIPEPVCI 446


>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 289 IQHHSIKRERAQRGICSLVSSTPNKFTGF 375
           +Q+  I++   +  +CSL  +TPN    F
Sbjct: 36  VQNEDIEKVHGRTSVCSLEKATPNDIAQF 64


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 278  LEDEFNTIPLNGNVHSAGYAV*SPAHQISLRDSQINDNKKKYLH 409
            L++  NT+P N  ++     +   A Q+   ++  N  KKKY H
Sbjct: 4492 LDEYLNTLPSNIPINLVQKILPCSAGQMYALNAWYNTEKKKYFH 4535


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 373 FANKR*QKKIPSLHSIKQNRFLGPY 447
           F   + QKK+P+L SI++N    P+
Sbjct: 239 FKKSKCQKKVPTLESIEENEGTEPH 263


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +2

Query: 29  FWFEIRTSEFERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHD 175
           FW      E E+ ++ KN     +R   +       RNKT  PPRT  D
Sbjct: 465 FWISFLRFELEQPLNSKNYTEHHARVSNVM---EMIRNKTRLPPRTIMD 510


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -2

Query: 133 PMPSREESFPTALTTVSVFPRHVSLKLRRSYFEPERYNV 17
           P+P      PTA++++  F ++ S   R++   PE  ++
Sbjct: 810 PLPPPAPPLPTAMSSLQKFEKNDSQIFRKTIIIPENISI 848


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 98  SRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRK 226
           SRR       H++ +K  A P ++H+S HR   +A+     +K
Sbjct: 587 SRRASKHESKHKRDSKHEARPESKHES-HRESKSAEKDKKDKK 628


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 395 FCYRLFANPVNLFGVLETKLHIPRCARS 312
           FC++  +NP NL  +L TKL+ PR  R+
Sbjct: 221 FCFKNISNPPNLLKLL-TKLY-PRSDRA 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,822
Number of Sequences: 5004
Number of extensions: 40433
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)