Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1056
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0084 - 25690346-25691206 33 0.099
02_01_0026 - 165640-166185 29 1.6
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 29 2.8
12_01_0190 - 1404374-1404402,1404491-1404558,1404830-1404967,140... 28 4.9
08_01_0876 - 8598664-8599374 28 4.9
05_02_0125 - 6852470-6852481,6852641-6853086,6853178-6853781,685... 27 6.5
03_06_0762 + 36078414-36078539,36078700-36078750,36078832-360789... 27 6.5
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 27 6.5
06_03_0901 - 25800317-25800403,25800420-25800674,25800817-258010... 27 8.6
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 27 8.6
02_04_0551 + 23801464-23801802 27 8.6
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168... 27 8.6
>02_05_0084 - 25690346-25691206
Length = 286
Score = 33.5 bits (73), Expect = 0.099
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = -2
Query: 226 FPMNRAAISSDGMTMSTIML-GSWWGGSFVS-LPMPSREESFPTALTTVS-VFPRHVSLK 56
+P AA+ GM ST G GG ++ LP SR +S TA + P H+S +
Sbjct: 197 YPPPPAAVGGVGMFHSTTTTTGGMLGGMALAVLPWVSRGQSPATAAASAYYTSPYHMSPR 256
Query: 55 LRRSYFEPER 26
LRR + E ER
Sbjct: 257 LRRQHMEVER 266
>02_01_0026 - 165640-166185
Length = 181
Score = 29.5 bits (63), Expect = 1.6
Identities = 21/88 (23%), Positives = 36/88 (40%)
Frame = +3
Query: 36 SKYERLSLSDTCLGKTETVVKAVGNDSSREGIGKETKLPPHQEPNMIVDIVIPSLLIAAL 215
S Y L L T + A+ +S + ++ + PP P +D + AA
Sbjct: 56 SGYPGADLHGLALFSTMPLRSALATIASEARVLRD-RAPPGSPPRSCLDSCLEVFRDAAY 114
Query: 216 FIGNAFIVLIIYKTGNGKTTIWKTNSTP 299
+GNA + ++ G+ KT + T P
Sbjct: 115 NLGNAVAAIESWRYGDAKTAMSATTDAP 142
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = -2
Query: 187 TMSTIMLGSWWGGSFV-----SLPMPSREESFPTALTTVSVFPRH 68
T S L SW+ G+ + +LP PSR+ S P L VF H
Sbjct: 431 TASDTRLSSWYDGNCLLKAIDTLPPPSRDVSKPLRLPICDVFSSH 475
>12_01_0190 -
1404374-1404402,1404491-1404558,1404830-1404967,
1405414-1405465,1405570-1405669,1406938-1407088,
1407212-1407311,1407471-1407585,1407786-1407950,
1408050-1408105,1408199-1408256
Length = 343
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 269 NDDLEDEFNTIPLNGNVHSAGYAV*SPAHQISLRDSQINDNKKKYL 406
N +L E +T ++ N H A S +Q+++ D + DNK+ Y+
Sbjct: 93 NPNLLQEIDTQKVSWNPHKHCLAFVSGKNQVTVHDFEEPDNKESYI 138
>08_01_0876 - 8598664-8599374
Length = 236
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 262 TEKRRFGRRIQHHSIKRERAQR 327
T +RR R++H S+KRER +R
Sbjct: 191 TRRRRCRLRLRHRSMKRERVER 212
>05_02_0125 -
6852470-6852481,6852641-6853086,6853178-6853781,
6853970-6854187,6854283-6854437,6854561-6854772
Length = 548
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 171 CWVLGGAAVLFLCRCPPV 118
CW+L G A+ C C PV
Sbjct: 498 CWILTGDAISAFCTCHPV 515
>03_06_0762 +
36078414-36078539,36078700-36078750,36078832-36078981,
36079055-36079803,36079914-36080013,36080116-36080259,
36080333-36080452,36080532-36080846
Length = 584
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +2
Query: 149 AAPPRTQHDSRHRHPVAADSGPVHRKRVHR-----THHL*NRXRKNDDLEDEFNTIPLNG 313
AAPP + HD H HP V +R+ + L + R + + D N +
Sbjct: 25 AAPPPSSHDDAHPHPHPQSRRTVPARRLRQRLEQEVSELKKQLRNEEAVHDILNRALQHS 84
Query: 314 NVHSAGYAV*SPA 352
N + ++ SP+
Sbjct: 85 NTTKSSSSLSSPS 97
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -2
Query: 178 TIMLGSWWGGSFVSLPMPSREESFPTALTTVSVFPRHVSLKLRRSYFEPERYN 20
T++LG WW G P+ +SF T + + ++ SY PE N
Sbjct: 161 TVLLGEWWNGD----PVALESQSFSTGIPAPNADAYTINGMPGDSYLCPETTN 209
>06_03_0901 -
25800317-25800403,25800420-25800674,25800817-25801043,
25801773-25801929,25802977-25803159
Length = 302
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/32 (34%), Positives = 12/32 (37%)
Frame = +2
Query: 155 PPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL 250
PP H HP HR+R HHL
Sbjct: 20 PPSPPSPHSHHHPAKRSCRSPHRRREAHLHHL 51
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 150 PPHQEPNMIVDIVIPSLLIAALFIGNAFIVLIIYKTGNGK--TTIWKTNSTP 299
PP + + + P LL A +F+G A++++ Y+ +GK T T+STP
Sbjct: 1954 PPPEAKKSFMRRMFPFLLAANVFVG-AYMLMRTYQKDSGKKDTENDPTSSTP 2004
>02_04_0551 + 23801464-23801802
Length = 112
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/66 (25%), Positives = 25/66 (37%)
Frame = +2
Query: 50 SEFERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKR 229
S RH + RR+R GG R + + D P DSG +R R
Sbjct: 33 SRSRRHWRRRREPRPWRRRQRGAAGGGRTWTTCGEVEQRRWDGNGEFPALVDSGCAYRAR 92
Query: 230 VHRTHH 247
+ T++
Sbjct: 93 IRPTNN 98
>01_05_0337 +
21115388-21115961,21116471-21116597,21116683-21116884,
21117460-21117546,21117622-21117681,21117800-21117886,
21118451-21118522,21118675-21118730,21118812-21118897,
21119427-21119517,21119593-21119750,21119827-21119918,
21120110-21120190,21120282-21120479
Length = 656
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 422 FMLCSEGIFFCYRL 381
F LCSE +F C+RL
Sbjct: 619 FFLCSEDVFLCFRL 632
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,451,810
Number of Sequences: 37544
Number of extensions: 277982
Number of successful extensions: 931
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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