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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1056
         (503 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)          32   0.31 
SB_47500| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-28)                 31   0.54 
SB_58832| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.54 
SB_42559| Best HMM Match : 7tm_1 (HMM E-Value=0)                       30   0.94 
SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0)                       30   0.94 
SB_36157| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-18)                 30   1.2  
SB_20216| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   1.6  
SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)        29   1.6  
SB_22354| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   1.6  
SB_7869| Best HMM Match : DUF947 (HMM E-Value=6.3)                     29   2.2  
SB_19167| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_24090| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   28   5.0  
SB_16219| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_9580| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  
SB_16204| Best HMM Match : 7tm_1 (HMM E-Value=2e-06)                   27   8.8  
SB_15877| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
          Length = 734

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +2

Query: 98  SRRERLFTGGHRQRNKTAAPPRTQHDSRHRH 190
           S RE L+T      N+T   PRTQ D RHRH
Sbjct: 145 SERESLYTP---HVNRTGNKPRTQRDERHRH 172


>SB_47500| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-28)
          Length = 961

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 144 KLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVLIIYKTGNGKTT 275
           K+ P Q    IV I + ++++    IGN  + LI+ KT     T
Sbjct: 9   KIDPEQPWKRIVKITVYAIIMVVALIGNILVCLIVRKTSKATRT 52


>SB_58832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 138 ETKLPPHQEPNMIVDIVIPSLLIAAL-FIGNAFIVLIIYKTGNGKT 272
           +TK   HQ     V + + S++   + F GN+ ++L IYKT + +T
Sbjct: 3   QTKCSDHQHSGSFVTLAVFSIISGLIAFCGNSVVLLAIYKTQSLRT 48


>SB_42559| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 388

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 198 LLIAALFIGNAFIVLIIYKTGNGKTTI 278
           L++    +GN F+VLI+YK  + +TT+
Sbjct: 35  LIMVLALVGNLFVVLIVYKNKSMQTTV 61


>SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 356

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +3

Query: 114 SSREGIGKETKLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVLIIYKTGNGKTTI 278
           S+    G +  LP H +    V +   SL++    +GN  +++++ +T   + TI
Sbjct: 5   SNATDFGAKCSLPQHSDVIQAVKVTSYSLILVFSALGNILVIVVVLRTRQMRRTI 59


>SB_36157| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-18)
          Length = 474

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/72 (22%), Positives = 34/72 (47%)
 Frame = +3

Query: 63  DTCLGKTETVVKAVGNDSSREGIGKETKLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVL 242
           D CL K +T+  ++ ND+S       TK    ++      +    L+  A+  GN F++ 
Sbjct: 2   DGCLNKNDTICNSL-NDTSDLDYDGLTKCE-WEDTARYTQVAALGLITFAILAGNTFVIY 59

Query: 243 IIYKTGNGKTTI 278
           ++++    + T+
Sbjct: 60  LVFRNKTMRKTV 71


>SB_20216| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 372

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 99  AVGNDSSREGIGKETKLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVLIIYKTGNGKTTI 278
           A+ N+SS  G      L    +      I   SL++    IGN  ++L++YK  N + TI
Sbjct: 7   AMRNESSDSGTRCHWDLLEATDAARNGKIAAFSLVLIVSLIGNILVILVVYKNKNMRKTI 66


>SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)
          Length = 1183

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +2

Query: 95  QSRRERLFTGGHRQRNKTAA---PPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*NRXR 265
           + R E++    HRQ+N   A       +++ RH + ++  +    R R  + H L +   
Sbjct: 289 KQREEKVIQNLHRQQNDAQANLSQSDVRNNERHTNRISHVNIETVRNRNEQDHELASLRN 348

Query: 266 KNDDLEDEFNTI 301
           + DDL+ E  T+
Sbjct: 349 ERDDLKREVRTL 360


>SB_22354| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 372

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 99  AVGNDSSREGIGKETKLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVLIIYKTGNGKTTI 278
           A+ N+SS  G      L    +      I   SL++    IGN  ++L++YK  N + TI
Sbjct: 7   AMRNESSDSGTRCHWDLLEATDAARNGKIAAFSLVLIVSLIGNILVILVVYKNKNMRKTI 66


>SB_7869| Best HMM Match : DUF947 (HMM E-Value=6.3)
          Length = 408

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 38  EIRTSEFERHVSWKNRDGCQSRRERLFTGGHRQ 136
           EI +   ER  +WK R+G  SR+ R  +GGHR+
Sbjct: 329 EITSLCAERAPAWKKRNG--SRKRRRDSGGHRE 359


>SB_19167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 74  WKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRT 241
           WKN D  + +        H + N+    P   HDS+   P+AA S   H K  H+T
Sbjct: 169 WKNHDSPEHQPPPAEENTHHEYNQR---PWKSHDSQELQPLAAGSKHQHSK--HKT 219


>SB_24090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 114 SSREGIGKETKLPPHQEPNMIVDIVIP 194
           S REG   ++ +PP  E N + D VIP
Sbjct: 264 SEREGEPVDSTIPPSPEANSVADYVIP 290


>SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 145 FVSLPMPSREESFPTALTTV-SVFPRHVSLKLR 50
           ++ +P  S  +S P  +  + S+F RH SLKLR
Sbjct: 166 YIEVPQLSDSQSSPVTINPLKSIFARHGSLKLR 198


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 265 EKRRFGRRIQHHSIKRERA-QRGICSLVSSTPNKFTGFANKR*QKKIPSLH-SIKQNR 432
           +K+  G+     S K  ++  + IC+ +S T  K TG      Q K+PSL   +K++R
Sbjct: 141 KKQGKGKNNPRASAKAAKSIAKNICASISGTFEKLTGMTFAEAQTKVPSLGLQLKKSR 198


>SB_16219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = +3

Query: 168 NMIVDIVIPSLLIAALFIGNAFIVLIIYKTGNGKT 272
           ++I++ +I ++ IA   +GNA ++ I+YK  + +T
Sbjct: 23  SVIIESLICAIGIAFTLVGNAIVLWIVYKNPSLRT 57


>SB_9580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 283 RRIQHHSIKRERAQRGICSLVSSTP 357
           R ++H S  R+R ++G C L +S+P
Sbjct: 53  RELKHRSFYRQRRRQGRCGLWASSP 77


>SB_16204| Best HMM Match : 7tm_1 (HMM E-Value=2e-06)
          Length = 294

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = +3

Query: 129 IGKETKLPPHQEPNMIVDI---VIPSLLIAALFIGNAFIVLIIYKTGNGKT 272
           I  +T + P +E +M + I   +I SL++    +GN+ +++I+YK  + +T
Sbjct: 53  ISNDTGVCPLRERSMGIKIGEAIIYSLILFFGVLGNSVVLIIVYKNRSMRT 103


>SB_15877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +3

Query: 45  ERLSLSDTCLGK-TETVVKAVGNDSSREGIGKETKLPPHQEPNMIVDIVIPSLLIAAL 215
           ERL+ S  C       + K      + + +GKETK+P +Q P        P +  A L
Sbjct: 19  ERLARSRKCFANFVNCIQKRKPVTVNGKSLGKETKIPRYQTPKTTTVSSYPQIFRAPL 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,570,028
Number of Sequences: 59808
Number of extensions: 318137
Number of successful extensions: 960
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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