BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1056 (503 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32) 32 0.31 SB_47500| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-28) 31 0.54 SB_58832| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54 SB_42559| Best HMM Match : 7tm_1 (HMM E-Value=0) 30 0.94 SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0) 30 0.94 SB_36157| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-18) 30 1.2 SB_20216| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 1.6 SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08) 29 1.6 SB_22354| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 1.6 SB_7869| Best HMM Match : DUF947 (HMM E-Value=6.3) 29 2.2 SB_19167| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9 SB_24090| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9 SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0 SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) 28 5.0 SB_16219| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8 SB_9580| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8 SB_16204| Best HMM Match : 7tm_1 (HMM E-Value=2e-06) 27 8.8 SB_15877| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8 >SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32) Length = 734 Score = 31.9 bits (69), Expect = 0.31 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = +2 Query: 98 SRRERLFTGGHRQRNKTAAPPRTQHDSRHRH 190 S RE L+T N+T PRTQ D RHRH Sbjct: 145 SERESLYTP---HVNRTGNKPRTQRDERHRH 172 >SB_47500| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-28) Length = 961 Score = 31.1 bits (67), Expect = 0.54 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 144 KLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVLIIYKTGNGKTT 275 K+ P Q IV I + ++++ IGN + LI+ KT T Sbjct: 9 KIDPEQPWKRIVKITVYAIIMVVALIGNILVCLIVRKTSKATRT 52 >SB_58832| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 364 Score = 31.1 bits (67), Expect = 0.54 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +3 Query: 138 ETKLPPHQEPNMIVDIVIPSLLIAAL-FIGNAFIVLIIYKTGNGKT 272 +TK HQ V + + S++ + F GN+ ++L IYKT + +T Sbjct: 3 QTKCSDHQHSGSFVTLAVFSIISGLIAFCGNSVVLLAIYKTQSLRT 48 >SB_42559| Best HMM Match : 7tm_1 (HMM E-Value=0) Length = 388 Score = 30.3 bits (65), Expect = 0.94 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +3 Query: 198 LLIAALFIGNAFIVLIIYKTGNGKTTI 278 L++ +GN F+VLI+YK + +TT+ Sbjct: 35 LIMVLALVGNLFVVLIVYKNKSMQTTV 61 >SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0) Length = 356 Score = 30.3 bits (65), Expect = 0.94 Identities = 13/55 (23%), Positives = 27/55 (49%) Frame = +3 Query: 114 SSREGIGKETKLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVLIIYKTGNGKTTI 278 S+ G + LP H + V + SL++ +GN +++++ +T + TI Sbjct: 5 SNATDFGAKCSLPQHSDVIQAVKVTSYSLILVFSALGNILVIVVVLRTRQMRRTI 59 >SB_36157| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-18) Length = 474 Score = 29.9 bits (64), Expect = 1.2 Identities = 16/72 (22%), Positives = 34/72 (47%) Frame = +3 Query: 63 DTCLGKTETVVKAVGNDSSREGIGKETKLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVL 242 D CL K +T+ ++ ND+S TK ++ + L+ A+ GN F++ Sbjct: 2 DGCLNKNDTICNSL-NDTSDLDYDGLTKCE-WEDTARYTQVAALGLITFAILAGNTFVIY 59 Query: 243 IIYKTGNGKTTI 278 ++++ + T+ Sbjct: 60 LVFRNKTMRKTV 71 >SB_20216| Best HMM Match : 7tm_1 (HMM E-Value=0) Length = 372 Score = 29.5 bits (63), Expect = 1.6 Identities = 18/60 (30%), Positives = 28/60 (46%) Frame = +3 Query: 99 AVGNDSSREGIGKETKLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVLIIYKTGNGKTTI 278 A+ N+SS G L + I SL++ IGN ++L++YK N + TI Sbjct: 7 AMRNESSDSGTRCHWDLLEATDAARNGKIAAFSLVLIVSLIGNILVILVVYKNKNMRKTI 66 >SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08) Length = 1183 Score = 29.5 bits (63), Expect = 1.6 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Frame = +2 Query: 95 QSRRERLFTGGHRQRNKTAA---PPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*NRXR 265 + R E++ HRQ+N A +++ RH + ++ + R R + H L + Sbjct: 289 KQREEKVIQNLHRQQNDAQANLSQSDVRNNERHTNRISHVNIETVRNRNEQDHELASLRN 348 Query: 266 KNDDLEDEFNTI 301 + DDL+ E T+ Sbjct: 349 ERDDLKREVRTL 360 >SB_22354| Best HMM Match : 7tm_1 (HMM E-Value=0) Length = 372 Score = 29.5 bits (63), Expect = 1.6 Identities = 18/60 (30%), Positives = 28/60 (46%) Frame = +3 Query: 99 AVGNDSSREGIGKETKLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVLIIYKTGNGKTTI 278 A+ N+SS G L + I SL++ IGN ++L++YK N + TI Sbjct: 7 AMRNESSDSGTRCHWDLLEATDAARNGKIAAFSLVLIVSLIGNILVILVVYKNKNMRKTI 66 >SB_7869| Best HMM Match : DUF947 (HMM E-Value=6.3) Length = 408 Score = 29.1 bits (62), Expect = 2.2 Identities = 15/33 (45%), Positives = 21/33 (63%) Frame = +2 Query: 38 EIRTSEFERHVSWKNRDGCQSRRERLFTGGHRQ 136 EI + ER +WK R+G SR+ R +GGHR+ Sbjct: 329 EITSLCAERAPAWKKRNG--SRKRRRDSGGHRE 359 >SB_19167| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 227 Score = 28.7 bits (61), Expect = 2.9 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = +2 Query: 74 WKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRT 241 WKN D + + H + N+ P HDS+ P+AA S H K H+T Sbjct: 169 WKNHDSPEHQPPPAEENTHHEYNQR---PWKSHDSQELQPLAAGSKHQHSK--HKT 219 >SB_24090| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 345 Score = 28.7 bits (61), Expect = 2.9 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 Query: 114 SSREGIGKETKLPPHQEPNMIVDIVIP 194 S REG ++ +PP E N + D VIP Sbjct: 264 SEREGEPVDSTIPPSPEANSVADYVIP 290 >SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 542 Score = 27.9 bits (59), Expect = 5.0 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = -2 Query: 145 FVSLPMPSREESFPTALTTV-SVFPRHVSLKLR 50 ++ +P S +S P + + S+F RH SLKLR Sbjct: 166 YIEVPQLSDSQSSPVTINPLKSIFARHGSLKLR 198 >SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) Length = 943 Score = 27.9 bits (59), Expect = 5.0 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = +1 Query: 265 EKRRFGRRIQHHSIKRERA-QRGICSLVSSTPNKFTGFANKR*QKKIPSLH-SIKQNR 432 +K+ G+ S K ++ + IC+ +S T K TG Q K+PSL +K++R Sbjct: 141 KKQGKGKNNPRASAKAAKSIAKNICASISGTFEKLTGMTFAEAQTKVPSLGLQLKKSR 198 >SB_16219| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 347 Score = 27.1 bits (57), Expect = 8.8 Identities = 11/35 (31%), Positives = 24/35 (68%) Frame = +3 Query: 168 NMIVDIVIPSLLIAALFIGNAFIVLIIYKTGNGKT 272 ++I++ +I ++ IA +GNA ++ I+YK + +T Sbjct: 23 SVIIESLICAIGIAFTLVGNAIVLWIVYKNPSLRT 57 >SB_9580| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 415 Score = 27.1 bits (57), Expect = 8.8 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +1 Query: 283 RRIQHHSIKRERAQRGICSLVSSTP 357 R ++H S R+R ++G C L +S+P Sbjct: 53 RELKHRSFYRQRRRQGRCGLWASSP 77 >SB_16204| Best HMM Match : 7tm_1 (HMM E-Value=2e-06) Length = 294 Score = 27.1 bits (57), Expect = 8.8 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = +3 Query: 129 IGKETKLPPHQEPNMIVDI---VIPSLLIAALFIGNAFIVLIIYKTGNGKT 272 I +T + P +E +M + I +I SL++ +GN+ +++I+YK + +T Sbjct: 53 ISNDTGVCPLRERSMGIKIGEAIIYSLILFFGVLGNSVVLIIVYKNRSMRT 103 >SB_15877| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 83 Score = 27.1 bits (57), Expect = 8.8 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Frame = +3 Query: 45 ERLSLSDTCLGK-TETVVKAVGNDSSREGIGKETKLPPHQEPNMIVDIVIPSLLIAAL 215 ERL+ S C + K + + +GKETK+P +Q P P + A L Sbjct: 19 ERLARSRKCFANFVNCIQKRKPVTVNGKSLGKETKIPRYQTPKTTTVSSYPQIFRAPL 76 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,570,028 Number of Sequences: 59808 Number of extensions: 318137 Number of successful extensions: 960 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 913 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 959 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1099461690 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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