Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1056
         (503 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC132862-1|AAI32863.1| 1316|Homo sapiens ubiquitin specific pept...    33   0.75 
BC060846-1|AAH60846.2| 1202|Homo sapiens USP42 protein protein.        33   0.75 
AY618868-1|AAT67238.1| 1324|Homo sapiens ubiquitin specific prot...    33   0.75 
AK022759-1|BAB14232.1| 1198|Homo sapiens protein ( Homo sapiens ...    33   0.75 
AJ601395-1|CAE53097.1| 1325|Homo sapiens ubiquitin-specific prot...    33   0.75 
DQ013130-1|AAY67799.1| 2014|Homo sapiens leucine-rich repeat kin...    30   4.0  
AJ242976-1|CAB45133.1|  380|Homo sapiens p241 protein protein.         29   7.0  

>BC132862-1|AAI32863.1| 1316|Homo sapiens ubiquitin specific peptidase
            42 protein.
          Length = 1316

 Score = 32.7 bits (71), Expect = 0.75
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = +2

Query: 77   KNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRH---RHPVAADS-GPVHRKRVHRTH 244
            ++  G  +R  R  T GHR R +   P       RH    HP   D   P  R+ + R  
Sbjct: 959  RSSSGEPARESRSKTEGHRHRRRRTCPRERDRQDRHAPEHHPGHGDRLSPGERRSLGRCS 1018

Query: 245  HL*NRXRKNDDLE 283
            H  +R R   +L+
Sbjct: 1019 HHHSRHRSGVELD 1031


>BC060846-1|AAH60846.2| 1202|Homo sapiens USP42 protein protein.
          Length = 1202

 Score = 32.7 bits (71), Expect = 0.75
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = +2

Query: 77   KNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRH---RHPVAADS-GPVHRKRVHRTH 244
            ++  G  +R  R  T GHR R +   P       RH    HP   D   P  R+ + R  
Sbjct: 959  RSSSGEPARESRSKTEGHRHRRRRTCPRERDRQDRHAPEHHPGHGDRLSPGERRSLGRCS 1018

Query: 245  HL*NRXRKNDDLE 283
            H  +R R   +L+
Sbjct: 1019 HHHSRHRSGVELD 1031


>AY618868-1|AAT67238.1| 1324|Homo sapiens ubiquitin specific protease
            42 protein.
          Length = 1324

 Score = 32.7 bits (71), Expect = 0.75
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = +2

Query: 77   KNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRH---RHPVAADS-GPVHRKRVHRTH 244
            ++  G  +R  R  T GHR R +   P       RH    HP   D   P  R+ + R  
Sbjct: 959  RSSSGEPARESRSKTEGHRHRRRRTCPRERDRQDRHAPEHHPGHGDRLSPGERRSLGRCS 1018

Query: 245  HL*NRXRKNDDLE 283
            H  +R R   +L+
Sbjct: 1019 HHHSRHRSGVELD 1031


>AK022759-1|BAB14232.1| 1198|Homo sapiens protein ( Homo sapiens cDNA
            FLJ12697 fis, clone NT2RP1000522, weakly similar to
            UBIQUITIN CARBOXYL-TERMINAL HYDROLASE DUB-1 (EC
            3.1.2.15). ).
          Length = 1198

 Score = 32.7 bits (71), Expect = 0.75
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = +2

Query: 77   KNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRH---RHPVAADS-GPVHRKRVHRTH 244
            ++  G  +R  R  T GHR R +   P       RH    HP   D   P  R+ + R  
Sbjct: 959  RSSSGEPARESRSKTEGHRHRRRRTCPRERDRQDRHAPEHHPGHGDRLSPGERRSLGRCS 1018

Query: 245  HL*NRXRKNDDLE 283
            H  +R R   +L+
Sbjct: 1019 HHHSRHRSGVELD 1031


>AJ601395-1|CAE53097.1| 1325|Homo sapiens ubiquitin-specific protease
            42 protein.
          Length = 1325

 Score = 32.7 bits (71), Expect = 0.75
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = +2

Query: 77   KNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRH---RHPVAADS-GPVHRKRVHRTH 244
            ++  G  +R  R  T GHR R +   P       RH    HP   D   P  R+ + R  
Sbjct: 959  RSSSGEPARESRSKTEGHRHRRRRTCPRERDRQDRHAPEHHPGHGDRLSPGERRSLGRCS 1018

Query: 245  HL*NRXRKNDDLE 283
            H  +R R   +L+
Sbjct: 1019 HHHSRHRSGVELD 1031


>DQ013130-1|AAY67799.1| 2014|Homo sapiens leucine-rich repeat kinase
           1 protein.
          Length = 2014

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 38  EIRTSEFERHVSWKNRDGCQSRRERLFTGGHRQRNKTAA 154
           +++T +  R+   KN DG +++R   FT   RQR+ T A
Sbjct: 497 QLKTLDLSRNQLGKNEDGLKTKRIAFFTTRGRQRSGTEA 535


>AJ242976-1|CAB45133.1|  380|Homo sapiens p241 protein protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +2

Query: 38  EIRTSEFERHVS-WKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGP 214
           E R+ E  +H    ++RD    R ER  +   R+R ++  P R + DSR+R        P
Sbjct: 53  ERRSPERLKHYDDHRHRDHSHGRGERHRSLDRRERGRS--PDRRRQDSRYRSDYDRGRTP 110

Query: 215 VHRKRVHRTHHL*NRXRKNDDLEDE 289
              +   R+    +R +K    E+E
Sbjct: 111 SRHRSYERSSRSPSREKKRARWEEE 135


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,564,256
Number of Sequences: 237096
Number of extensions: 1383224
Number of successful extensions: 3480
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3460
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)