Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1056
(503 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT003589-1|AAO39592.1| 796|Drosophila melanogaster LD03662p pro... 29 2.7
AE014297-2554|AAF55575.2| 1784|Drosophila melanogaster CG31224-P... 29 2.7
AE014297-2526|AAF55560.3| 642|Drosophila melanogaster CG31122-P... 29 2.7
S80561-1|AAB21409.1| 601|Drosophila melanogaster pdm-1 protein. 29 4.7
M81957-1|AAA28829.1| 601|Drosophila melanogaster POU domain pro... 29 4.7
M65015-1|AAA28480.1| 601|Drosophila melanogaster dPOU-19 protein. 29 4.7
AY118387-1|AAM48416.1| 601|Drosophila melanogaster RE34782p pro... 29 4.7
AE014134-2223|AAF53205.2| 601|Drosophila melanogaster CG6246-PA... 29 4.7
BT024212-1|ABC86274.1| 1085|Drosophila melanogaster RE28791p pro... 28 6.2
AY052072-1|AAK93496.1| 2409|Drosophila melanogaster SD02860p pro... 28 6.2
AJ309005-1|CAC35209.1| 2382|Drosophila melanogaster GRAAL2 prote... 28 6.2
AJ251803-1|CAB64653.1| 1449|Drosophila melanogaster GRAAL protei... 28 6.2
AE014296-973|AAF50767.2| 1929|Drosophila melanogaster CG5146-PA ... 28 6.2
>BT003589-1|AAO39592.1| 796|Drosophila melanogaster LD03662p
protein.
Length = 796
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 110 RLFTGGHRQRNKTAAPPRTQHDSRHRHPVA 199
+LFT +Q+ +T PP+TQ S + P A
Sbjct: 99 QLFTQQQQQQQQTVVPPQTQQQSHQKPPPA 128
>AE014297-2554|AAF55575.2| 1784|Drosophila melanogaster CG31224-PA
protein.
Length = 1784
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 110 RLFTGGHRQRNKTAAPPRTQHDSRHRHPVA 199
+LFT +Q+ +T PP+TQ S + P A
Sbjct: 273 QLFTQQQQQQQQTVVPPQTQQQSHQKPPPA 302
>AE014297-2526|AAF55560.3| 642|Drosophila melanogaster CG31122-PA
protein.
Length = 642
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 128 HRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHH 247
H Q+ +T PP+ +H H HP + H H +HH
Sbjct: 583 HMQQQQTQQPPQARH---HHHPATSHR---HHHHQHHSHH 616
>S80561-1|AAB21409.1| 601|Drosophila melanogaster pdm-1 protein.
Length = 601
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Frame = +2
Query: 80 NRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKR-VHRTHHL*N 256
N C + T R R+ + H R ++ P H H +HL +
Sbjct: 58 NASDCDDNNSSVGTSSDRCRSPLSPALSLSHQQAKRQLMSLQPHPAHHHHNPHHLNHLNH 117
Query: 257 RXRKNDDLEDEFNTIPLNGNVHSAGYAV*SPAHQI 361
K ++ D+ N LN ++ ++ SP++ +
Sbjct: 118 HQYKQEEDYDDANGGALNLTSDNSRHSTQSPSNSV 152
>M81957-1|AAA28829.1| 601|Drosophila melanogaster POU domain
protein protein.
Length = 601
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Frame = +2
Query: 80 NRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKR-VHRTHHL*N 256
N C + T R R+ + H R ++ P H H +HL +
Sbjct: 58 NASDCDDNNSSVGTSSDRCRSPLSPALSLSHQQAKRQLMSLQPHPAHHHHNPHHLNHLNH 117
Query: 257 RXRKNDDLEDEFNTIPLNGNVHSAGYAV*SPAHQI 361
K ++ D+ N LN ++ ++ SP++ +
Sbjct: 118 HQYKQEEDYDDANGGALNLTSDNSRHSTQSPSNSV 152
>M65015-1|AAA28480.1| 601|Drosophila melanogaster dPOU-19 protein.
Length = 601
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Frame = +2
Query: 80 NRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKR-VHRTHHL*N 256
N C + T R R+ + H R ++ P H H +HL +
Sbjct: 58 NASDCDDNNSSVGTSSDRCRSPLSPALSLSHQQAKRQLMSLQPHPAHHHHNPHHLNHLNH 117
Query: 257 RXRKNDDLEDEFNTIPLNGNVHSAGYAV*SPAHQI 361
K ++ D+ N LN ++ ++ SP++ +
Sbjct: 118 HQYKQEEDYDDANGGALNLTSDNSRHSTQSPSNSV 152
>AY118387-1|AAM48416.1| 601|Drosophila melanogaster RE34782p
protein.
Length = 601
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Frame = +2
Query: 80 NRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKR-VHRTHHL*N 256
N C + T R R+ + H R ++ P H H +HL +
Sbjct: 58 NASDCDDNNSSVGTSSDRCRSPLSPALSLSHQQAKRQLMSLQPHPAHHHHNPHHLNHLNH 117
Query: 257 RXRKNDDLEDEFNTIPLNGNVHSAGYAV*SPAHQI 361
K ++ D+ N LN ++ ++ SP++ +
Sbjct: 118 HQYKQEEDYDDANGGALNLTSDNSRHSTQSPSNSV 152
>AE014134-2223|AAF53205.2| 601|Drosophila melanogaster CG6246-PA
protein.
Length = 601
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Frame = +2
Query: 80 NRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKR-VHRTHHL*N 256
N C + T R R+ + H R ++ P H H +HL +
Sbjct: 58 NASDCDDNNSSVGTSSDRCRSPLSPALSLSHQQAKRQLMSLQPHPAHHHHNPHHLNHLNH 117
Query: 257 RXRKNDDLEDEFNTIPLNGNVHSAGYAV*SPAHQI 361
K ++ D+ N LN ++ ++ SP++ +
Sbjct: 118 HQYKQEEDYDDANGGALNLTSDNSRHSTQSPSNSV 152
>BT024212-1|ABC86274.1| 1085|Drosophila melanogaster RE28791p protein.
Length = 1085
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Frame = +2
Query: 77 KNRDGCQSRRERLFTGGHRQRNKTA------APPRTQHDSRHRHPVAADSGPVHRKR 229
+ R SRR RL GHR+R + A PR+ SR R ++ D H R
Sbjct: 959 RTRSRSPSRRRRLPPAGHRKRGSISPIPQKLAGPRSPPPSRRRQSLSRDREREHLSR 1015
>AY052072-1|AAK93496.1| 2409|Drosophila melanogaster SD02860p protein.
Length = 2409
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 134 QRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*NRXRKNDDLEDEFNTIPLNG 313
+ + ++P + QH RH H +AD H + L N ++ DL D+++ +P N
Sbjct: 1732 EHHPNSSPHQHQHHHRHPHEHSADFHLRH-PELPNPFPLKNETPQHQDLNDDWDLLP-NS 1789
Query: 314 N 316
N
Sbjct: 1790 N 1790
>AJ309005-1|CAC35209.1| 2382|Drosophila melanogaster GRAAL2 protein
protein.
Length = 2382
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 134 QRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*NRXRKNDDLEDEFNTIPLNG 313
+ + ++P + QH RH H +AD H + L N ++ DL D+++ +P N
Sbjct: 1705 EHHPNSSPHQHQHHHRHPHEHSADFHLRH-PELPNPFPLKNETPQHQDLNDDWDLLP-NS 1762
Query: 314 N 316
N
Sbjct: 1763 N 1763
>AJ251803-1|CAB64653.1| 1449|Drosophila melanogaster GRAAL protein
protein.
Length = 1449
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 134 QRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*NRXRKNDDLEDEFNTIPLNG 313
+ + ++P + QH RH H +AD H + L N ++ DL D+++ +P N
Sbjct: 772 EHHPNSSPHQHQHHHRHPHEHSADFHLRH-PELPNPFPLKNETPQHQDLNDDWDLLP-NS 829
Query: 314 N 316
N
Sbjct: 830 N 830
>AE014296-973|AAF50767.2| 1929|Drosophila melanogaster CG5146-PA
protein.
Length = 1929
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Frame = +2
Query: 77 KNRDGCQSRRERLFTGGHRQRNKTA------APPRTQHDSRHRHPVAADSGPVHRKR 229
+ R SRR RL GHR+R + A PR+ SR R ++ D H R
Sbjct: 1327 RTRSRSPSRRRRLPPAGHRKRGSISPIPQKLAGPRSPPPSRRRQSLSRDREREHLSR 1383
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,460,751
Number of Sequences: 53049
Number of extensions: 466853
Number of successful extensions: 1692
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1692
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1804766976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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