Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1056
(503 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48245-2|CAA88291.1| 309|Caenorhabditis elegans Hypothetical pr... 33 0.089
Z37139-10|CAA85495.1| 309|Caenorhabditis elegans Hypothetical p... 33 0.089
U95074-2|AAB94648.1| 309|Caenorhabditis elegans cyclophilin iso... 33 0.089
U36581-1|AAC47131.1| 309|Caenorhabditis elegans cyclophilin iso... 33 0.089
Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical pr... 30 1.1
U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical pr... 29 1.9
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z32681-1|CAA83608.1| 761|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 27 7.7
U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical pr... 27 7.7
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 27 7.7
>Z48245-2|CAA88291.1| 309|Caenorhabditis elegans Hypothetical
protein T27D1.1 protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.089
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 59 ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 193
E ++ + R G + RRER T H +RN AP + HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304
>Z37139-10|CAA85495.1| 309|Caenorhabditis elegans Hypothetical
protein T27D1.1 protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.089
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 59 ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 193
E ++ + R G + RRER T H +RN AP + HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304
>U95074-2|AAB94648.1| 309|Caenorhabditis elegans cyclophilin
isoform 9 protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.089
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 59 ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 193
E ++ + R G + RRER T H +RN AP + HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304
>U36581-1|AAC47131.1| 309|Caenorhabditis elegans cyclophilin
isoform 9 protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.089
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 59 ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 193
E ++ + R G + RRER T H +RN AP + HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304
>Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical
protein C14B1.6 protein.
Length = 793
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 266 KNDDLEDEFNTIPLNGNVHSAGYAV*SPAHQISLR-DSQIN 385
K+D+LEDE NTI L +HS P ++S R SQ+N
Sbjct: 227 KHDELEDELNTIALE-ELHSTTRDTSPPRTRLSTRAQSQLN 266
>U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical
protein R04E5.8b protein.
Length = 142
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 122 GGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*NRXRKND 274
G H R PPR + R+RH G H+ + HH +R R+ +
Sbjct: 67 GQHHNRGHHHGPPRNHNQDRNRH--RNHDGNRHQNQDRSRHHNQDRNRRQN 115
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 122 GGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*NRXRKND 274
G H R PPR + R+RH G H+ + HH +R R+ +
Sbjct: 911 GQHHNRGHHHGPPRNHNQDRNRH--RNHDGNRHQNQDRSRHHNQDRNRRQN 959
>Z32681-1|CAA83608.1| 761|Caenorhabditis elegans Hypothetical
protein F56F3.1 protein.
Length = 761
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +2
Query: 128 HRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVH 235
H Q+ QH HR P + GP H++ +H
Sbjct: 411 HLQKFAKQQAESGQHIHHHRQPTPPNGGPQHQQHLH 446
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 125 GHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRK 226
GHR R+ + + R++ +SR R A+ S HR+
Sbjct: 2 GHRSRSNSRSQSRSRENSRGRSRSASKSPVYHRR 35
>U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical
protein R02F2.2 protein.
Length = 1182
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 174 SCWVLGGAAVLFLCRC-PPVKSRSRRL 97
SC +G AAV +C PP+K R R++
Sbjct: 820 SCSAIGNAAVTAMCTVPPPMKLRKRKI 846
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 62 RHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSR 181
R W+N +S R +R R+++ +PPR + SR
Sbjct: 553 RRSRWENTSPIRSPRRSPLRRDNRDRSRSRSPPRRRRRSR 592
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,477,698
Number of Sequences: 27780
Number of extensions: 233675
Number of successful extensions: 662
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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