BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1056 (503 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z48245-2|CAA88291.1| 309|Caenorhabditis elegans Hypothetical pr... 33 0.089 Z37139-10|CAA85495.1| 309|Caenorhabditis elegans Hypothetical p... 33 0.089 U95074-2|AAB94648.1| 309|Caenorhabditis elegans cyclophilin iso... 33 0.089 U36581-1|AAC47131.1| 309|Caenorhabditis elegans cyclophilin iso... 33 0.089 Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical pr... 30 1.1 U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical pr... 29 1.9 U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 1.9 Z32681-1|CAA83608.1| 761|Caenorhabditis elegans Hypothetical pr... 28 4.4 Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 27 7.7 U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical pr... 27 7.7 AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 27 7.7 >Z48245-2|CAA88291.1| 309|Caenorhabditis elegans Hypothetical protein T27D1.1 protein. Length = 309 Score = 33.5 bits (73), Expect = 0.089 Identities = 19/45 (42%), Positives = 26/45 (57%) Frame = +2 Query: 59 ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 193 E ++ + R G + RRER T H +RN AP + HDS H+HP Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304 >Z37139-10|CAA85495.1| 309|Caenorhabditis elegans Hypothetical protein T27D1.1 protein. Length = 309 Score = 33.5 bits (73), Expect = 0.089 Identities = 19/45 (42%), Positives = 26/45 (57%) Frame = +2 Query: 59 ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 193 E ++ + R G + RRER T H +RN AP + HDS H+HP Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304 >U95074-2|AAB94648.1| 309|Caenorhabditis elegans cyclophilin isoform 9 protein. Length = 309 Score = 33.5 bits (73), Expect = 0.089 Identities = 19/45 (42%), Positives = 26/45 (57%) Frame = +2 Query: 59 ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 193 E ++ + R G + RRER T H +RN AP + HDS H+HP Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304 >U36581-1|AAC47131.1| 309|Caenorhabditis elegans cyclophilin isoform 9 protein. Length = 309 Score = 33.5 bits (73), Expect = 0.089 Identities = 19/45 (42%), Positives = 26/45 (57%) Frame = +2 Query: 59 ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 193 E ++ + R G + RRER T H +RN AP + HDS H+HP Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304 >Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical protein C14B1.6 protein. Length = 793 Score = 29.9 bits (64), Expect = 1.1 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = +2 Query: 266 KNDDLEDEFNTIPLNGNVHSAGYAV*SPAHQISLR-DSQIN 385 K+D+LEDE NTI L +HS P ++S R SQ+N Sbjct: 227 KHDELEDELNTIALE-ELHSTTRDTSPPRTRLSTRAQSQLN 266 >U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical protein R04E5.8b protein. Length = 142 Score = 29.1 bits (62), Expect = 1.9 Identities = 15/51 (29%), Positives = 22/51 (43%) Frame = +2 Query: 122 GGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*NRXRKND 274 G H R PPR + R+RH G H+ + HH +R R+ + Sbjct: 67 GQHHNRGHHHGPPRNHNQDRNRH--RNHDGNRHQNQDRSRHHNQDRNRRQN 115 >U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein R04E5.8a protein. Length = 997 Score = 29.1 bits (62), Expect = 1.9 Identities = 15/51 (29%), Positives = 22/51 (43%) Frame = +2 Query: 122 GGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*NRXRKND 274 G H R PPR + R+RH G H+ + HH +R R+ + Sbjct: 911 GQHHNRGHHHGPPRNHNQDRNRH--RNHDGNRHQNQDRSRHHNQDRNRRQN 959 >Z32681-1|CAA83608.1| 761|Caenorhabditis elegans Hypothetical protein F56F3.1 protein. Length = 761 Score = 27.9 bits (59), Expect = 4.4 Identities = 11/36 (30%), Positives = 16/36 (44%) Frame = +2 Query: 128 HRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVH 235 H Q+ QH HR P + GP H++ +H Sbjct: 411 HLQKFAKQQAESGQHIHHHRQPTPPNGGPQHQQHLH 446 >Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical protein C18D11.4 protein. Length = 309 Score = 27.1 bits (57), Expect = 7.7 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +2 Query: 125 GHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRK 226 GHR R+ + + R++ +SR R A+ S HR+ Sbjct: 2 GHRSRSNSRSQSRSRENSRGRSRSASKSPVYHRR 35 >U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical protein R02F2.2 protein. Length = 1182 Score = 27.1 bits (57), Expect = 7.7 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%) Frame = -3 Query: 174 SCWVLGGAAVLFLCRC-PPVKSRSRRL 97 SC +G AAV +C PP+K R R++ Sbjct: 820 SCSAIGNAAVTAMCTVPPPMKLRKRKI 846 >AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical protein Y106G6D.7 protein. Length = 948 Score = 27.1 bits (57), Expect = 7.7 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = +2 Query: 62 RHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSR 181 R W+N +S R +R R+++ +PPR + SR Sbjct: 553 RRSRWENTSPIRSPRRSPLRRDNRDRSRSRSPPRRRRRSR 592 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,477,698 Number of Sequences: 27780 Number of extensions: 233675 Number of successful extensions: 662 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 652 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 662 length of database: 12,740,198 effective HSP length: 76 effective length of database: 10,628,918 effective search space used: 967231538 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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