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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1056
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48245-2|CAA88291.1|  309|Caenorhabditis elegans Hypothetical pr...    33   0.089
Z37139-10|CAA85495.1|  309|Caenorhabditis elegans Hypothetical p...    33   0.089
U95074-2|AAB94648.1|  309|Caenorhabditis elegans cyclophilin iso...    33   0.089
U36581-1|AAC47131.1|  309|Caenorhabditis elegans cyclophilin iso...    33   0.089
Z37139-3|CAA85492.2|  793|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z32681-1|CAA83608.1|  761|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z48245-2|CAA88291.1|  309|Caenorhabditis elegans Hypothetical
           protein T27D1.1 protein.
          Length = 309

 Score = 33.5 bits (73), Expect = 0.089
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +2

Query: 59  ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 193
           E  ++ + R G + RRER  T  H +RN   AP +  HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304


>Z37139-10|CAA85495.1|  309|Caenorhabditis elegans Hypothetical
           protein T27D1.1 protein.
          Length = 309

 Score = 33.5 bits (73), Expect = 0.089
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +2

Query: 59  ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 193
           E  ++ + R G + RRER  T  H +RN   AP +  HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304


>U95074-2|AAB94648.1|  309|Caenorhabditis elegans cyclophilin
           isoform 9 protein.
          Length = 309

 Score = 33.5 bits (73), Expect = 0.089
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +2

Query: 59  ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 193
           E  ++ + R G + RRER  T  H +RN   AP +  HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304


>U36581-1|AAC47131.1|  309|Caenorhabditis elegans cyclophilin
           isoform 9 protein.
          Length = 309

 Score = 33.5 bits (73), Expect = 0.089
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +2

Query: 59  ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 193
           E  ++ + R G + RRER  T  H +RN   AP +  HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304


>Z37139-3|CAA85492.2|  793|Caenorhabditis elegans Hypothetical
           protein C14B1.6 protein.
          Length = 793

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 266 KNDDLEDEFNTIPLNGNVHSAGYAV*SPAHQISLR-DSQIN 385
           K+D+LEDE NTI L   +HS       P  ++S R  SQ+N
Sbjct: 227 KHDELEDELNTIALE-ELHSTTRDTSPPRTRLSTRAQSQLN 266


>U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical
           protein R04E5.8b protein.
          Length = 142

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 122 GGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*NRXRKND 274
           G H  R     PPR  +  R+RH      G  H+ +    HH  +R R+ +
Sbjct: 67  GQHHNRGHHHGPPRNHNQDRNRH--RNHDGNRHQNQDRSRHHNQDRNRRQN 115


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 122  GGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*NRXRKND 274
            G H  R     PPR  +  R+RH      G  H+ +    HH  +R R+ +
Sbjct: 911  GQHHNRGHHHGPPRNHNQDRNRH--RNHDGNRHQNQDRSRHHNQDRNRRQN 959


>Z32681-1|CAA83608.1|  761|Caenorhabditis elegans Hypothetical
           protein F56F3.1 protein.
          Length = 761

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 128 HRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVH 235
           H Q+         QH   HR P   + GP H++ +H
Sbjct: 411 HLQKFAKQQAESGQHIHHHRQPTPPNGGPQHQQHLH 446


>Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical
           protein C18D11.4 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 125 GHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRK 226
           GHR R+ + +  R++ +SR R   A+ S   HR+
Sbjct: 2   GHRSRSNSRSQSRSRENSRGRSRSASKSPVYHRR 35


>U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical
           protein R02F2.2 protein.
          Length = 1182

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 174 SCWVLGGAAVLFLCRC-PPVKSRSRRL 97
           SC  +G AAV  +C   PP+K R R++
Sbjct: 820 SCSAIGNAAVTAMCTVPPPMKLRKRKI 846


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 62  RHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSR 181
           R   W+N    +S R       +R R+++ +PPR +  SR
Sbjct: 553 RRSRWENTSPIRSPRRSPLRRDNRDRSRSRSPPRRRRRSR 592


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,477,698
Number of Sequences: 27780
Number of extensions: 233675
Number of successful extensions: 662
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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